From 44bb7cdb563b01d1e11cb2c858d30cded4ecb758 Mon Sep 17 00:00:00 2001
From: smortezah <s_morteza_h@yahoo.com>
Date: Fri, 17 Dec 2021 14:23:48 +0000
Subject: [PATCH] Add docker

---
 Dockerfile | 12 ++++++++++++
 README.md  | 20 +++++++++++++++-----
 2 files changed, 27 insertions(+), 5 deletions(-)
 create mode 100644 Dockerfile

diff --git a/Dockerfile b/Dockerfile
new file mode 100644
index 000000000..f421d141e
--- /dev/null
+++ b/Dockerfile
@@ -0,0 +1,12 @@
+FROM ubuntu:20.04
+LABEL maintainer "Morteza Hosseini"
+
+ENV DEBIAN_FRONTEND=noninteractive
+RUN apt update && apt install -y cmake g++ wget unzip
+
+RUN wget https://github.com/smortezah/smashpp/archive/refs/heads/master.zip
+RUN unzip master.zip && rm -f master.zip
+RUN mv smashpp-master smashpp
+
+WORKDIR /smashpp
+RUN bash install.sh
\ No newline at end of file
diff --git a/README.md b/README.md
index 9e491dc8b..a34540750 100755
--- a/README.md
+++ b/README.md
@@ -6,12 +6,14 @@ A fast tool to find and visualize rearrangements in DNA sequences.
 
 To install Smash++ on various operating systems, follow the instructions below. It requires CMake (>= 3.9) and a C++14 compliant compiler. Note that a precompiled executable is available for 64 bit operating systems in the `experiment/bin` directory.
 
-### Conda
-
-Install [Miniconda](https://docs.conda.io/en/latest/miniconda.html), then run the following:
-
+### Docker
+Pull the image by
 ```bash
-conda install -c bioconda -y smashpp
+docker pull smortezah/smashpp
+```
+and run it:
+```bash
+docker run -it smortezah/smashpp
 ```
 
 ### Ubuntu
@@ -59,6 +61,14 @@ cd smashpp
 
 **Note**: in all operating systems, in the case of permission denial, you can use `sudo bash install.sh` instead of `./install.sh`.
 
+### Conda
+
+Install [Miniconda](https://docs.conda.io/en/latest/miniconda.html), then run the following:
+
+```bash
+conda install -c bioconda -y smashpp
+```
+
 ## Run
 
 ```text