From f231b8971199130deb14336ad45dc916ad95ef05 Mon Sep 17 00:00:00 2001
From: Elmo Chavez <50608494+sobieddch90@users.noreply.github.com>
Date: Thu, 13 Jul 2023 01:02:28 +0200
Subject: [PATCH] Storing EEG Datasets in Google Drive
---
EEG Dataset Exploration.ipynb | 5435 ++-------------------------------
1 file changed, 246 insertions(+), 5189 deletions(-)
diff --git a/EEG Dataset Exploration.ipynb b/EEG Dataset Exploration.ipynb
index 1aab3bb..91990cb 100644
--- a/EEG Dataset Exploration.ipynb
+++ b/EEG Dataset Exploration.ipynb
@@ -3,11 +3,11 @@
{
"cell_type": "markdown",
"metadata": {
- "colab_type": "text",
- "id": "view-in-github"
+ "id": "view-in-github",
+ "colab_type": "text"
},
"source": [
- "![\"Open](\"https://colab.research.google.com/assets/colab-badge.svg\")
\n"
+ ""
]
},
{
@@ -97,5124 +97,183 @@
"- Pip: `pip install mne`\n",
"- Conda: `conda install -c conda-forge mne-base`\n",
"\n",
- "_Suggestion_: Create a new conda environment to install MNE\n",
- "\n",
- "**HMMLEARN**\\\n",
- "Is a set of algorithms for unsupervised learning and inference of Hidden Markov Models. For supervised learning learning of HMMs and similar models see seqlearn.\\\n",
- "https://hmmlearn.readthedocs.io/en/latest/index.html\n",
- "\n",
- "- Pip: `!pip install hmmlearn`\n",
- "- Conda: `conda install -c conda-forge hmmlearn`\n"
+ "_Suggestion_: Create a new conda environment to install MNE\n"
]
},
{
"cell_type": "code",
- "execution_count": 21,
- "metadata": {
- "id": "-BNnrwS7kMhA"
- },
- "outputs": [],
"source": [
- "import numpy as np\n",
- "import pandas as pd\n",
- "import matplotlib.pyplot as plt\n",
- "%matplotlib inline\n",
- "\n",
- "import openneuro as on\n",
- "import mne\n",
- "import os\n",
- "\n",
- "#from hmmlearn import hmm"
- ]
- },
- {
- "cell_type": "markdown",
+ "%%capture\n",
+ "!pip install openneuro-py\n",
+ "!pip install mne"
+ ],
"metadata": {
- "id": "zvw_ohHZhQEh"
+ "id": "g_sw4-jbRQ5b"
},
- "source": [
- "# Download Dataset\n",
- "\n",
- "Downloading the dataset directly from the website using openneuro package.\n",
- "\n",
- "**PD**: _running the download command may take several minutes to load and download all the datasets._\n"
- ]
+ "execution_count": 1,
+ "outputs": []
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 2,
"metadata": {
- "colab": {
- "base_uri": "https://localhost:8080/",
- "height": 257,
- "referenced_widgets": [
- "3d9501b78b4d4fe083ebbcf6763e56ea",
- "d2cad9f4d3bf45eeabbc125ad21f559d",
- "4c6a6c417b7e4b078e3069335809796e",
- "e49979f8b9364d58a544c39ce6dfaba2",
- "9e58b979ae6647c4a174bc469f179901",
- "a193d9437e81410190fb33cd60d2668a",
- "9649c2a38c194a9cb697d2681c29132e",
- "563df12e5ca848be95cd35fdbe05ba87",
- "7269fa0498b04970ba57753795ab5b44",
- "89fb9ba4cef148c69e79d84faa768cb1",
- "a59223247b2a4c4e9f14df230cd947b7"
- ]
- },
- "id": "58FZHqG0UCIh",
- "outputId": "d5300211-de37-4dd1-8596-c7fa6057c57d"
+ "id": "-BNnrwS7kMhA"
},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "\n",
- "👋 Hello! This is openneuro-py 2023.1.0. Great to see you! 🤗\n",
- "\n",
- " 👉 Please report problems 🤯 and bugs 🪲 at\n",
- " https://github.com/hoechenberger/openneuro-py/issues\n",
- "\n",
- "🌍 Preparing to download ds004504 …\n"
- ]
- },
- {
- "data": {
- "application/vnd.jupyter.widget-view+json": {
- "model_id": "de1733cff7f54f8ea45ea3cd8116fd80",
- "version_major": 2,
- "version_minor": 0
- },
- "text/plain": [
- "📁 Traversing directories for ds004504 : 0 entities [00:00, ? entities/s]"
- ]
- },
- "metadata": {},
- "output_type": "display_data"
- },
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "📥 Retrieving up to 357 files (5 concurrent downloads). \n",
- "✅ Finished downloading ds004504.\n",
- " \n",
- "🧠 Please enjoy your brains.\n",
- " \n"
- ]
- },
- {
- "data": {
- "application/vnd.jupyter.widget-view+json": {
- "model_id": "588e0494df064c2a89678e453c54999e",
- "version_major": 2,
- "version_minor": 0
- },
- "text/plain": [
- "Skipping README: already downloaded.: 100%|##########| 6.61k/6.61k [00:00