!This is a modified version of the dHCP pipeline! It's adapted for inner and pial surface reconstruction using labels that aren't Draw-EM's.
The dHCP structural pipeline performs structural analysis of neonatal brain MRI images (T1 and T2) and consists of:
- cortical and sub-cortical volume segmentation
- cortical surface extraction (white matter and pial surface)
- cortical surface inflation and
- projection to sphere
It is described in detail in:
A. Makropoulos, E. C. Robinson et al. "The Developing Human Connectome Project: a Minimal Processing Pipeline for Neonatal Cortical Surface Reconstruction" link
Antonios Makropoulos: main author, developer of the structural pipeline, and segmentation software. more
Andreas Schuh: contributor, developer of the cortical surface extraction, and surface inflation software. more
Robert Wright: contributor, development of the spherical projection software.
The dHCP structural pipeline is distributed under the terms outlined in LICENSE.txt.