environment.yml

name: gnn-assembly
channels:
  - defaults
dependencies:
  - _libgcc_mutex=0.1=main
  - _openmp_mutex=5.1=1_gnu
  - bzip2=1.0.8=h7b6447c_0
  - c-ares=1.18.1=h7f8727e_0
  - ca-certificates=2022.4.26=h06a4308_0
  - cmake=3.22.1=h1fce559_0
  - expat=2.4.4=h295c915_0
  - krb5=1.19.2=hac12032_0
  - ld_impl_linux-64=2.38=h1181459_1
  - libcurl=7.82.0=h0b77cf5_0
  - libedit=3.1.20210910=h7f8727e_0
  - libev=4.33=h7f8727e_1
  - libffi=3.3=he6710b0_2
  - libgcc-ng=11.2.0=h1234567_0
  - libgomp=11.2.0=h1234567_0
  - libnghttp2=1.46.0=hce63b2e_0
  - libssh2=1.10.0=h8f2d780_0
  - libstdcxx-ng=11.2.0=h1234567_0
  - libuv=1.40.0=h7b6447c_0
  - lz4-c=1.9.3=h295c915_1
  - ncurses=6.3=h7f8727e_2
  - openssl=1.1.1o=h7f8727e_0
  - pip=21.2.4=py38h06a4308_0
  - python=3.8.13=h12debd9_0
  - readline=8.1.2=h7f8727e_1
  - rhash=1.4.1=h3c74f83_1
  - setuptools=61.2.0=py38h06a4308_0
  - sqlite=3.38.3=hc218d9a_0
  - tk=8.6.11=h1ccaba5_1
  - wheel=0.37.1=pyhd3eb1b0_0
  - xz=5.2.5=h7f8727e_1
  - zlib=1.2.12=h7f8727e_2
  - zstd=1.5.2=ha4553b6_0
  - pip:
    - biopython==1.79
    - certifi==2021.5.30
    - chardet==4.0.0
    - click==8.1.3
    - configparser==5.2.0
    - cycler==0.10.0
    - decorator==4.4.2
    - docker-pycreds==0.4.0
    - gitdb==4.0.9
    - gitpython==3.1.27
    - idna==2.10
    - joblib==1.0.1
    - kiwisolver==1.3.1
    - matplotlib==3.4.2
    - networkx==2.5.1
    - numpy==1.20.3
    - pathtools==0.1.2
    - pillow==8.2.0
    - promise==2.3
    - protobuf==3.20.1
    - psutil==5.9.1
    - pyparsing==2.4.7
    - python-dateutil==2.8.1
    - pyyaml==6.0
    - requests==2.25.1
    - scikit-learn==0.24.2
    - scipy==1.6.3
    - sentry-sdk==1.5.12
    - shortuuid==1.0.9
    - six==1.16.0
    - smmap==5.0.0
    - subprocess32==3.5.4
    - threadpoolctl==2.1.0
    - tqdm==4.62.2
    - typing-extensions==3.10.0.0
    - urllib3==1.26.5
    - wandb==0.12.1
prefix: /home/vrcekl/anaconda3/envs/gnn-assembly