From 5360deac23749024ada36d0f9c69df7c480a9d82 Mon Sep 17 00:00:00 2001 From: kkaris Date: Wed, 27 Sep 2023 11:29:10 -0700 Subject: [PATCH] Update ubibrowser test --- indra/tests/test_sources/test_ubibrowser.py | 16 +++++++++------- 1 file changed, 9 insertions(+), 7 deletions(-) diff --git a/indra/tests/test_sources/test_ubibrowser.py b/indra/tests/test_sources/test_ubibrowser.py index fefe074b64..fb4c040853 100644 --- a/indra/tests/test_sources/test_ubibrowser.py +++ b/indra/tests/test_sources/test_ubibrowser.py @@ -13,14 +13,15 @@ def test_extract_statements(): up = ubibrowser.process_file(e3_file, dub_file) assert len(up.statements) == 9 - assert isinstance(up.statements[0], Ubiquitination) + assert isinstance(up.statements[2], Ubiquitination) assert isinstance(up.statements[-1], Deubiquitination) assert_valid_statements(up.statements) - #1 AMFR2_HUMAN A1AT_HUMAN Q9UKV5 P01009 AMFR SERPINA1 - # MEDLINE 16979136 Here we report that ... RING 3 E3 H.sapiens - e3_stmt = up.statements[0] + #198 AMFR2_HUMAN A1AT_HUMAN Q9UKV5 P01009 AMFR SERPINA1 + # MEDLINE 16979136 "Here we report that ..." RING 1 + # "Training data" H.sapiens + e3_stmt = up.statements[2] assert e3_stmt.enz.name == 'AMFR' assert e3_stmt.enz.db_refs['UP'] == 'Q9UKV5' assert e3_stmt.sub.name == 'SERPINA1' @@ -30,9 +31,10 @@ def test_extract_statements(): assert e3_stmt.evidence[0].pmid == '16979136' assert e3_stmt.evidence[0].text.startswith('Here we report that') - # 677 UBP33_HUMAN ARRB1_HUMAN Q8TEY7 P49407 USP33 ARRB1 - # MEDLINE 19363159 We now report the discovery that... USP 1 DUB H.sapiens - dub_stmt = up.statements[-1] + # 56 UBP33_HUMAN ARRB1_HUMAN Q8TEY7 P49407 USP33 ARRB1 MEDLINE + # 19363159 "We now report the discovery that " "USP 1" "Training data" + # H.sapiens + dub_stmt = up.statements[5] assert dub_stmt.enz.name == 'USP33' assert dub_stmt.enz.db_refs['UP'] == 'Q8TEY7' assert dub_stmt.sub.name == 'ARRB1'