Merge pull request #133 from annierose3/transfer_ir_manual_corr

Transfer ir manual corr

Author: annierose3

.github/workflows/ci_html_build.yml

@@ -7,11 +7,6 @@ on:
 
   workflow_dispatch:
 
-permissions:
-  contents: write
-  id-token: write
-  
-
 jobs:
   Generate_HTML:
     if: github.event.pull_request.merged == true

index.md

@@ -1,13 +1,13 @@
-# STScI Notebook Repository HQ
+# STScI HST Notebook Repository HQ
 This page provides links to notebooks created by various Hubble Space
 Telescope instrument teams and software groups, including:
 
-[Advanced Camera for Surveys (ACS)](https://www.stsci.edu/hst/instrumentation/acs);
+- [Advanced Camera for Surveys (ACS)](https://www.stsci.edu/hst/instrumentation/acs)
 
-[Cosmic Origins Spectrograph (COS)](https://www.stsci.edu/hst/instrumentation/cos);
+- [Cosmic Origins Spectrograph (COS)](https://www.stsci.edu/hst/instrumentation/cos)
 
-[DrizzlePac](https://www.stsci.edu/scientific-community/software/drizzlepac);
+- [DrizzlePac](https://www.stsci.edu/scientific-community/software/drizzlepac)
 
-[Near Infrared Camera and Multi-Object Spectrometer (NICMOS)](https://www.stsci.edu/hst/instrumentation/legacy/nicmos);
+- [Near Infrared Camera and Multi-Object Spectrometer (NICMOS)](https://www.stsci.edu/hst/instrumentation/legacy/nicmos)
 
-[Space Telescope Imaging Spectrograph (STIS)](https://www.stsci.edu/hst/instrumentation/stis);
+- [Space Telescope Imaging Spectrograph (STIS)](https://www.stsci.edu/hst/instrumentation/stis)

notebooks/ACS/acs_cte_forward_model/requirements.txt

@@ -4,3 +4,5 @@ astroquery==0.4.6
 matplotlib==3.7.0
 numpy==1.23.4
 photutils==1.6.0
+crds==11.17.7
+stsci.tools==4.1.0

notebooks/ACS/acs_findsat_mrt/requirements.txt

@@ -1,5 +1,6 @@
-acstools==3.5.0
+acstools==3.6.1
 astropy==5.2.1
 astroquery==0.4.6
 matplotlib==3.7.0
 numpy==1.23.4
+photutils==1.9.0

notebooks/ACS/acs_pixel_area_maps/requirements.txt

@@ -5,3 +5,4 @@ stsci.imagestats==1.6.3
 stsci.skypac==1.0.9
 stsci.stimage==0.2.6
 stsci.tools==4.0.1
+matplotlib==3.7.0

notebooks/ACS/acs_reduction/requirements.txt

@@ -1,3 +1,5 @@
 astropy==5.2.1
 astroquery==0.4.6
 stwcs==1.7.2
+crds==11.17.0
+matplotlib==3.7.0

notebooks/ACS/acs_saturation_trails/requirements.txt

@@ -3,7 +3,7 @@ astroquery==0.4.6
 matplotlib==3.7.0
 numpy==1.23.4
 photutils==1.6.0
-scipy==1.9.1
+scipy==1.11.3
 stsci.image==2.3.5
 stsci.imagestats==1.6.3
 stsci.skypac==1.0.9

notebooks/ACS/acs_subarrays/requirements.txt

@@ -2,3 +2,4 @@ acstools==3.5.0
 astropy==5.2.1
 astroquery==0.4.6
 stwcs==1.7.2
+crds==11.17.0

notebooks/COS/Extract/requirements.txt

@@ -3,4 +3,4 @@ astroquery==0.4.6
 calcos==3.4.4
 matplotlib==3.7.0
 numpy==1.23.4
-scipy==1.9.1
+scipy==1.10.0

notebooks/COS/LSF/requirements.txt

@@ -2,4 +2,4 @@ astropy==5.2.1
 astroquery==0.4.6
 matplotlib==3.7.0
 numpy==1.23.4
-scipy==1.9.1
+scipy==1.10.0

notebooks/STIS/CoronagraphyViz/STIS_Coronagraphy_Visualization_v2.ipynb

@@ -360,7 +360,7 @@
     "        elif feature == 'disk':\n",
     "            if ('disk_width' not in kwargs) or ('disk_height' not in kwargs):\n",
     "                raise NameError(\"Disk width and/or height not specified.\")\n",
-    "            el = Ellipse((0, 0), kwargs['disk_width'], kwargs['disk_height'], -orient-45+featurepa, fill=0, fc=None, lw=5, ec='magenta') # angle was incorrectly featurepa+90\n",
+    "            el = Ellipse((0, 0), kwargs['disk_width'], kwargs['disk_height'], angle=-orient-45+featurepa, fill=0, fc=None, lw=5, ec='magenta') # angle was incorrectly featurepa+90\n",
     "            ax_cart.add_patch(el)\n",
     "\n",
     "        else:\n",

notebooks/STIS/cross-correlation/requirements.txt

@@ -2,5 +2,5 @@ astropy==5.2.1
 astroquery==0.4.6
 matplotlib==3.7.0
 numpy==1.23.4
-scipy==1.9.1
+scipy==1.10.0
 stistools==1.4.4

notebooks/STIS/view_data/figures/ch2_stis_data4.1.jpg

@@ -1,5 +1,5 @@
-WFC3Library
-===========
+WFC3 Notebooks
+==============
 
 Here the user will find the latest Python-based software notebooks for the Wide
 Field Camera 3 (WFC3) on the Hubble Space Telescope (HST). For our primary WFC3