diff --git a/notebooks/IFU_cube_continuum_fit/NGC4151_FeII_ContinuumFit.html b/notebooks/IFU_cube_continuum_fit/NGC4151_FeII_ContinuumFit.html index 830b2056..91c1201f 100644 --- a/notebooks/IFU_cube_continuum_fit/NGC4151_FeII_ContinuumFit.html +++ b/notebooks/IFU_cube_continuum_fit/NGC4151_FeII_ContinuumFit.html @@ -707,7 +707,7 @@

Video:
- +

Alternative way to do continuum subtraction using numpy#

diff --git a/notebooks/MRS_Mstar_analysis/JWST_Mstar_dataAnalysis_analysis.html b/notebooks/MRS_Mstar_analysis/JWST_Mstar_dataAnalysis_analysis.html index 90f2fc04..12caa9d8 100644 --- a/notebooks/MRS_Mstar_analysis/JWST_Mstar_dataAnalysis_analysis.html +++ b/notebooks/MRS_Mstar_analysis/JWST_Mstar_dataAnalysis_analysis.html @@ -730,7 +730,7 @@

Read in the SpectrumList (12 unique spectra) - +

Load in the spectrum list from above. Note, only the first spectrum in your list is displayed automatically. You will need to turn on the remaining spectra in the “DATA” drop-down, then hit the “Home” button in the toolbar, and scale our plot accordingly to see the other spectra.#

@@ -779,7 +779,7 @@

Video 2: - +

Developer Note. Need to pick a different unit than meters. https://jira.stsci.edu/browse/JDAT-1792#

@@ -894,7 +894,7 @@

Visualize for Analysis the Single Spectrum1D Object Created Above from All 1
- +

Developer Note: Cannot currently open a spectrum1d output from cubeviz in specviz. https://jira.stsci.edu/browse/JDAT-1791#

@@ -1094,7 +1094,7 @@

As an example lets focus on the amorphous silicate 10 micron region.
- +

@@ -18957,7 +18957,7 @@

ImViz# exp_obj = getattr(self._obj, attr) - +

@@ -20077,7 +20077,7 @@

Inspecting Custom Results - +

The cell below shows similar information using Imviz instead to visualize this.

- +

Calibrate the remaining images if you are happy with the above results

@@ -23607,7 +23607,7 @@

Matching Source IDs Across Catalogs - +

@@ -23797,7 +23797,7 @@

Manually Editing the Source Catalog - + Space Telescope Logo diff --git a/notebooks/NIRISS/niriss_imaging/niriss-imaging-tutorial.html b/notebooks/NIRISS/niriss_imaging/niriss-imaging-tutorial.html index dd0b7013..e74cc1c9 100644 --- a/notebooks/NIRISS/niriss_imaging/niriss-imaging-tutorial.html +++ b/notebooks/NIRISS/niriss_imaging/niriss-imaging-tutorial.html @@ -681,7 +681,7 @@

Display uncalibrated image - +

Adjust settings for the viewer:

@@ -13404,7 +13404,7 @@

Display rate image - +

The cell below shows similar information using Imviz instead to visualize this.

- +

Calibrate the remaining images if you are happy with the above results

@@ -23698,7 +23698,7 @@

Inspecting Custom Results - +

@@ -23780,7 +23780,7 @@

Matching Source IDs Across Catalogs - +

@@ -23969,7 +23969,7 @@

Manually Editing the Source Catalog - + Space Telescope Logo diff --git a/notebooks/NIRISS_WFSS_advanced/02_niriss_wfss_spec2.html b/notebooks/NIRISS_WFSS_advanced/02_niriss_wfss_spec2.html index 375f785a..a050c00a 100644 --- a/notebooks/NIRISS_WFSS_advanced/02_niriss_wfss_spec2.html +++ b/notebooks/NIRISS_WFSS_advanced/02_niriss_wfss_spec2.html @@ -5924,7 +5924,7 @@

Find a Source in the Spec2 Data
Text(0.5, 0.98, 'GR150C F200W')
 
- +

We can then take a look at the extracted spectrum in this box both in the cal file and the x1d file. In the extracted spectrum below you can see the [OII] and H\(\beta\) emission lines from the galaxy.

Note: The upturned edge effects seen in the 1-D spectrum are due to interpolation at the edges of the extraction box for the current flux calibration. This is also part of an ongoing calibration effort.

@@ -5986,7 +5986,7 @@

Find a Source in the Spec2 Data - +

@@ -38711,7 +38711,7 @@

Look at all of the Files for a Single Source
2024-06-07 14:03:10,904 - stpipe - WARNING - 
 
- +

Overplot these files on top of each other to compare. The two grisms will be different line styles to draw attention to any differences that could be due to the calibration, including contamination, and each blocking filter will be a different color.

@@ -38820,7 +38820,7 @@

Look at all of the sources for a single file - +

@@ -38903,7 +38903,7 @@

Visualize where the extracted sources are on the dispersed image, and how th
- +

Continue to explore further, including using the spec3 stage of the pipeline!

Space Telescope Logo diff --git a/notebooks/background_estimation_imaging/Imaging_Sky_Background_Estimation.html b/notebooks/background_estimation_imaging/Imaging_Sky_Background_Estimation.html index 80acff8d..bb9fd7c5 100644 --- a/notebooks/background_estimation_imaging/Imaging_Sky_Background_Estimation.html +++ b/notebooks/background_estimation_imaging/Imaging_Sky_Background_Estimation.html @@ -692,7 +692,7 @@

Create the nasty sky background - +

diff --git a/notebooks/galaxy_redshift/redshift_fitting.html b/notebooks/galaxy_redshift/redshift_fitting.html index 61970fab..3c4ef39e 100644 --- a/notebooks/galaxy_redshift/redshift_fitting.html +++ b/notebooks/galaxy_redshift/redshift_fitting.html @@ -670,7 +670,7 @@

“By eye” redshift measurement with Specviz - +

diff --git a/notebooks/ifu_optimal/ifu_optimal.html b/notebooks/ifu_optimal/ifu_optimal.html index fcbca268..58ff741c 100644 --- a/notebooks/ifu_optimal/ifu_optimal.html +++ b/notebooks/ifu_optimal/ifu_optimal.html @@ -652,7 +652,7 @@

2. Read in NIRSpec IFU Cube - +
@@ -1126,7 +1126,7 @@

12. Optimal Extraction using WebbPSF Model - +

The optimally extracted spectrum is less noisy than the aperture extraction and incorporates fewer bad pixels and cosmic ray events. The OIII line profile is different because extended emission is downweighted with respect to the unresolved quasar nucleus.

Space Telescope Logo diff --git a/notebooks/mos_spectroscopy_advanced/MOSspec_advanced.html b/notebooks/mos_spectroscopy_advanced/MOSspec_advanced.html index 6acfdfae..50a6dc43 100644 --- a/notebooks/mos_spectroscopy_advanced/MOSspec_advanced.html +++ b/notebooks/mos_spectroscopy_advanced/MOSspec_advanced.html @@ -697,7 +697,7 @@

Use Specviz2d to extract a better 1D spectrum - +

Developer note
Is there a way to get out an uncertainty array from the extraction?
@@ -750,7 +750,7 @@

Use Specviz2d to extract a better 1D spectrum - +

There are still some artifacts in the data, but we can select a subset masking the artifacts and get out a spectrum without unwanted spikes. We can do so using the tool to select a subset with the “add” option (in the top bar) to select multiple regions as part of a single subset.

- +
Space Telescope Logo

Notebook created by Camilla Pacifici (cpacifici@stsci.edu)
diff --git a/notebooks/niriss_imaging/niriss-imaging-tutorial.html b/notebooks/niriss_imaging/niriss-imaging-tutorial.html index 94119771..9c7307a5 100644 --- a/notebooks/niriss_imaging/niriss-imaging-tutorial.html +++ b/notebooks/niriss_imaging/niriss-imaging-tutorial.html @@ -674,7 +674,7 @@

Display uncalibrated image - +

Adjust settings for the viewer:

- +

Point sources will be marked by small pink circles and extended sources will be marked by larger white circles.

We get the region coordinates from the bounding rectangle – in this case, setting the coordinates to x1=51, y1=3, x2=1268, y2=9 seems fine – or, we can set them directly. Finally, we create a new array containing only our extraction region (so that we don’t need to continually index our original array).

A column index of 670 and width 50 seem to work reasonably well for this file, so we can now generate the final slice for kernel fitting.

- +

WCS Linking Controls#

diff --git a/notebooks/specviz_notebookGUI_interaction/specviz_notebook_gui_interaction_redshift.html b/notebooks/specviz_notebookGUI_interaction/specviz_notebook_gui_interaction_redshift.html index d636e7e8..fba9d525 100644 --- a/notebooks/specviz_notebookGUI_interaction/specviz_notebook_gui_interaction_redshift.html +++ b/notebooks/specviz_notebookGUI_interaction/specviz_notebook_gui_interaction_redshift.html @@ -699,7 +699,7 @@

2. Open Specviz and load the 1D spectra we are interested in - +

The following cell opens one extension of the x1d file (75), creates a Spectrum1D object, and loads it into Specviz. A mask is set to only keep the part of the spectra with good sensitivity (1.34 to 1.66 micron) in the F150W filter.

I load just the interesting spectrum (spec1d_line).