diff --git a/jwql/pull_jwql_branch.sh b/jwql/pull_jwql_branch.sh
index 95a1c94b4..5544124d7 100644
--- a/jwql/pull_jwql_branch.sh
+++ b/jwql/pull_jwql_branch.sh
@@ -76,8 +76,9 @@ fi
 # 3. Install jwql
 pip install -e ..
 
-# 4. Merge Any Migrations
-python ./website/manage.py migrate
+# 4. Merge Any Migrations that exist in either database (router.py will sort where they go)
+python ./website/manage.py migrate jwql
+python ./website/manage.py migrate jwql --database=monitors
 
 # 5. Bring the service back up
 if [ "$reset" = true ]; then