From 32fd41f09e2c21b95a3f92b381ca902a2cb23307 Mon Sep 17 00:00:00 2001
From: Kayli <kglidic@stsci.edu>
Date: Tue, 14 Jan 2025 02:45:19 -0500
Subject: [PATCH] some PEP8 style fixes

---
 .../NIRSPEC/ifu/JWPipeNB-NIRSpec-IFU.ipynb    | 22 ++++++++++---------
 1 file changed, 12 insertions(+), 10 deletions(-)

diff --git a/notebooks/NIRSPEC/ifu/JWPipeNB-NIRSpec-IFU.ipynb b/notebooks/NIRSPEC/ifu/JWPipeNB-NIRSpec-IFU.ipynb
index 493fb70..8fd2e3c 100644
--- a/notebooks/NIRSPEC/ifu/JWPipeNB-NIRSpec-IFU.ipynb
+++ b/notebooks/NIRSPEC/ifu/JWPipeNB-NIRSpec-IFU.ipynb
@@ -129,7 +129,7 @@
     "# Control logging level: INFO, WARNING, ERROR\n",
     "# Run command loging.disable if want to hide logging\n",
     "# ERROR messages.\n",
-    "#logging.disable(logging.ERROR)\n",
+    "# logging.disable(logging.ERROR)\n",
     "warnings.simplefilter(\"ignore\", RuntimeWarning)"
    ]
   },
@@ -227,7 +227,7 @@
     "# the CRDS_CONTEXT environment variable. Here we show how this is done,\n",
     "# although we leave the line commented out in order to use the default context.\n",
     "# If you wish to specify a different context, uncomment the line below.\n",
-    "#os.environ['CRDS_CONTEXT'] = 'jwst_1298.pmap'  # CRDS context for 1.16.0\n",
+    "# os.environ['CRDS_CONTEXT'] = 'jwst_1298.pmap'  # CRDS context for 1.16.0\n",
     "\n",
     "# Set CRDS cache directory to user home if not already set.\n",
     "if os.getenv('CRDS_PATH') is None:\n",
@@ -1070,7 +1070,8 @@
     "if bg_dir:\n",
     "    rate_bg = sorted(glob.glob(det1_bgdir + '*_rate.fits'))\n",
     "    rateints_bg = sorted(glob.glob(det1_bgdir + '*_rateints.fits'))\n",
-    "    print(f\"BACKGROUND | RATE[INTS] Files:\\n{'-'*20}\\n\" + \"\\n\".join(rate_bg + rateints_bg))"
+    "    print(f\"BACKGROUND | RATE[INTS] Files:\\n{'-' * 20}\\n\"\n",
+    "          + \"\\n\".join(rate_bg + rateints_bg))"
    ]
   },
   {
@@ -1246,13 +1247,14 @@
     "if bg_dir:\n",
     "\n",
     "    # Retrieve background observation number if not in demo_mode for filtering.\n",
-    "    bg_observtn = globals().get('bg_observtn', fits.getval(rate_bg[0], 'observtn') if rate_bg else None)\n",
-    "    bg_obs_asn = [asn for asn in spec2_asn_all if f\"-o{bg_observtn}\" in asn]\n",
-    "    \n",
+    "    bg_obs = globals().get('bg_observtn',\n",
+    "                           fits.getval(rate_bg[0], 'observtn') if rate_bg else None)\n",
+    "    bg_obs_asn = [asn for asn in spec2_asn_all if f\"-o{bg_obs}\" in asn]\n",
+    "\n",
     "    # Filter for ASN files with leakcal exposures.\n",
     "    spec2_bg_asn_with_leakcal = [asn for asn in bg_obs_asn if is_leakcal_present(asn)]\n",
     "\n",
-    "    # Use leakcal ASNs if available, otherwise fallback to ASNs with just the background.\n",
+    "    # Use leakcal ASNs if available, otherwise use ASNs with just the background.\n",
     "    spec2_bg_asn = spec2_bg_asn_with_leakcal or bg_obs_asn\n",
     "    print(f\"Stage 2 Background ASN Files:\\n{'-'*20}\\n{chr(10).join(spec2_bg_asn)}\")"
    ]
@@ -1388,8 +1390,8 @@
     "\n",
     "        try:\n",
     "            asn_data = json.load(open(asn))\n",
-    "            sci_file = os.path.basename(asn_data['products'][0]['members'][0]['expname'])\n",
-    "            print(f\"Applying Stage 2 Corrections & Calibrations to: {sci_file}\")\n",
+    "            scifile = os.path.basename(asn_data['products'][0]['members'][0]['expname'])\n",
+    "            print(f\"Applying Stage 2 Corrections & Calibrations to: {scifile}\")\n",
     "\n",
     "            spec2sci_result = Spec2Pipeline.call(asn,\n",
     "                                                 save_results=True,\n",
@@ -1677,7 +1679,7 @@
     "        spec3_asn = os.path.join(asn_dir, asn_filename)\n",
     "        with open(spec3_asn, \"w\") as fd:\n",
     "            fd.write(serialized)\n",
-    "        \n",
+    "\n",
     "        if isinstance(spec3_asn, str):\n",
     "            spec3_asn = [spec3_asn]\n",
     "        print(f\"Stage 3 ASN Files:\\n{'-'*20}\\n\" + \"\\n\".join(spec3_asn))"