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Added references for diagnostics
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doc/REFERENCE_POSTERIOR_DEFINITION.md

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@@ -5,10 +5,10 @@ The purpose of the reference posterior definition is to define the criteria for
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A reference posterior should have:
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1. 10 000 draws per parameter in the model.
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1. An Rhat (see [arXiv](https://arxiv.org/abs/1903.08008)) below 1.01 for all parameters.
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1. Approximately independent draws, i.e all parameters have an autocorrelation at lag 1 that is less than 0.05.
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1. All Expected Fraction of Missing Information (E-FMI) is below 0.2
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1. No divergent transitions (if HMC is used)
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1. An Rhat (see [Vehtari et al. (2021)](https://doi.org/10.1214/20-BA1221)) below 1.01 for all parameters.
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1. Approximately independent draws, that is, all parameters have an autocorrelation at lag 1 that is less than 0.05 (see, e.g., [Vehtari et al. (2021)](https://doi.org/10.1214/20-BA1221))).
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1. All Expected Fraction of Missing Information (E-FMI) is below 0.2 (see section 6.1 of [A Conceptual Introduction to Hamiltonian Monte Carlo](https://arxiv.org/abs/1701.02434))
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1. No divergent transitions if HMC is used (see [Stan Reference Manual](https://mc-stan.org/docs/reference-manual/divergent-transitions.html))
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Computing Reference Posteriors Draws

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