JacobKMcPherson
Follow
Genomics
MMseqs2: ultra fast and sensitive search and clustering suite
an interactive viewer for populations of bacterial genomes linked by a phylogeny
Accurate sample inference from amplicon data with single nucleotide resolution
Pipeline components for real-time phylodynamic analysis
VAriant Mapping and Prediction of antimicrobial resistance
State of the CARD 2021 Presentations & Demonstrations, view recorded lectures, overview, and walkthroughs.
A public repository for collective curation of antimicrobial resistance (AMR) genes and mutations. Submit, discuss, and resolve AMR curation issues.
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. …
Processing and analysis of data coming from Illumina sequencing machines
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.
Cutadapt removes adapter sequences from sequencing reads
Tools (written in C using htslib) for manipulating next-generation sequencing data
Next generation sequencing reads de novo assembler.
Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network out…
MMseqs2 app to run on your workstation or servers
NCBI Prokaryotic Genome Annotation Pipeline
Comparison pipeline for Prokaryote Protein Coding Gene Predictors
Rapid large-scale prokaryote pan genome analysis
A tool to circularize genome assemblies
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Official website for RECON - The R Epidemics CONsortium