JacobKMcPherson
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Microbiome 🐛
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
Generate Galaxy tool descriptions automatically from QIIME 2 actions.
QIIME 2 plugin for paired sample comparisons
A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations
Prototype graphical user interface for QIIME 2
This is primarily a repo for capturing policies and discussions around the different workflows for NMDC. This is also used for project management related pieces.
The OSDF JSON-Schema files for the HMP project
MaAsLin2: Microbiome Multivariate Association with Linear Models
Novelty-inclusive microbial community profiling of shotgun metagenomes
Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to…
Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
A companion R package for the MicrobiomeAnalyst web server
Code repository of the Earth Microbiome Project.
For analysis of microbiome and microbial community data
Schloss Lab Tools for Reproducible Microbiome Research 💩
bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.
MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
An analysis and visualization platform for 'omics data
R package for community ecologists: popular ordination methods, ecological null models & diversity analysis