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Stars

Transcriptomics

RNA sequencing, single-cell RNA sequencing
12 repositories

Analysis of cell-cell communication at single-cell resolution

R 100 13 Updated Sep 10, 2024
R 48 9 Updated Apr 18, 2020
R 29 4 Updated Apr 12, 2023

Genetic multiplexing of barcoded single cell RNA-seq

C++ 125 26 Updated Jul 1, 2024

R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets

JavaScript 223 47 Updated Feb 27, 2024
HTML 61 16 Updated Jul 6, 2021

R toolkit for single cell genomics

R 2,388 931 Updated Feb 26, 2025

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

R 676 155 Updated Jan 6, 2024

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Nextflow 990 728 Updated Mar 7, 2025