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setup.py
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setup.py
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#This script is based on setup.py included in the pyFFTW
#package under the BSD license. That still requires the copyright
#notice below the gpl.
########################################################################
########################################################################
# Copyright (c) 2013,2014 Svetlin Tassev
# Princeton University,Harvard University
#
# This file is part of pyCOLA.
#
# pyCOLA is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# pyCOLA is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with pyCOLA. If not, see <http://www.gnu.org/licenses/>.
#
########################################################################
########################################################################
#
# This file incorporates work covered by the following copyright and
# permission notice:
#
# Copyright 2014 Knowledge Economy Developments Ltd
#
# Henry Gomersall
# heng@kedevelopments.co.uk
#
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# * Redistributions of source code must retain the above copyright notice, this
# list of conditions and the following disclaimer.
#
# * Redistributions in binary form must reproduce the above copyright notice,
# this list of conditions and the following disclaimer in the documentation
# and/or other materials provided with the distribution.
#
# * Neither the name of the copyright holder nor the names of its contributors
# may be used to endorse or promote products derived from this software without
# specific prior written permission.
#
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
# ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
# LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
# CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
# SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
# INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
# CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
# ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
# POSSIBILITY OF SUCH DAMAGE.
#
try:
from setuptools import setup
except ImportError:
from distutils.core import setup
from distutils.extension import Extension
from distutils.util import get_platform
from distutils.ccompiler import get_default_compiler
import os
try:
from Cython.Distutils import build_ext as build_ext
sources = [os.path.join(os.getcwd(), 'cic.pyx'),
os.path.join(os.getcwd(), 'potential.pyx'),
os.path.join(os.getcwd(), 'acceleration.pyx'),
os.path.join(os.getcwd(), 'box_smooth.pyx')
]
except ImportError as e:
sources = [os.path.join(os.getcwd(), 'cic.c'),
os.path.join(os.getcwd(), 'potential.c'),
os.path.join(os.getcwd(), 'acceleration.c'),
os.path.join(os.getcwd(), 'box_smooth.c')
]
for i in sources:
if not os.path.exists(i):
print i
print os.path.exists(i)
raise ImportError(str(e) + '. ' +
'Cython is required to build the initial .c file.')
# We can't cythonize, but that's ok as it's been done already.
from distutils.command.build_ext import build_ext
include_dirs = []
library_dirs = []
package_data = {}
libraries = []
ext_modules = [Extension(
"cic",
[sources[0]],
extra_compile_args=['-fopenmp','-O3' ,'-pthread' ,'-fPIC' ,'-fwrapv','-fno-strict-aliasing'],
extra_link_args=['-fopenmp','-O3' ,'-pthread' ,'-fPIC' ,'-fwrapv','-fno-strict-aliasing'],
libraries=libraries,
include_dirs=include_dirs
),
Extension(
"potential",
[sources[1]],
extra_compile_args=['-fopenmp','-O3' ,'-pthread' ,'-fPIC' ,'-fwrapv','-fno-strict-aliasing'],
extra_link_args=['-fopenmp','-O3' ,'-pthread' ,'-fPIC' ,'-fwrapv','-fno-strict-aliasing'],
libraries=libraries,
include_dirs=include_dirs
),
Extension(
"acceleration",
[sources[2]],
extra_compile_args=['-fopenmp','-O3','-pthread' ,'-fPIC' ,'-fwrapv','-fno-strict-aliasing'],
extra_link_args=['-fopenmp','-O3' ,'-pthread' ,'-fPIC' ,'-fwrapv','-fno-strict-aliasing'],
libraries=libraries,
include_dirs=include_dirs
),
Extension(
"box_smooth",
[sources[3]],
extra_compile_args=['-fopenmp','-O3' ,'-pthread' ,'-fPIC' ,'-fwrapv','-fno-strict-aliasing'],
extra_link_args=['-fopenmp','-O3' ,'-pthread' ,'-fPIC' ,'-fwrapv','-fno-strict-aliasing'],
libraries=libraries,
include_dirs=include_dirs
)
]
long_description="""pyCOLA is a multithreaded Python/Cython N-body code,
implementing the Comoving Lagrangian Acceleration (COLA) method in the
temporal and spatial domains.
pyCOLA is based on the following two papers:
(todo)
...
...
please, cite them if using for scientific research.
pyCOLA requires `NumPy <http://www.numpy.org/>_`, `SciPy
<http://www.scipy.org/>`_, `pyFFTW
<https://hgomersall.github.io/pyFFTW/index.html>`_, `h5py
<http://www.h5py.org/>`_. Note that pyFFTW v0.9.2 does not support
large arrays, so one needs to install the development version from
`github <https://github.com/hgomersall/pyFFTW>`_, where the bug has
been fixed.
The pyCOLA documentation can be found
`here <https://bitbucket.org/tassev/pycola/downloads/pyCOLA.pdf>`_, and the source
is on `bitbucket <https://bitbucket.org/tassev/pycola>`_.
"""
setup_args = {
'name': 'pyCOLA',
'version': 1.0,
'author': 'Svetlin Tassev',
'author_email': 'stassev@alum.mit.edu',
'description': 'A Python/Cython N-body code, implementing the Comoving Lagrangian Acceleration (COLA) method in the temporal and spatial domains.',
'url': '',
'long_description': long_description,
'classifiers': [
'Programming Language :: Python',
'Programming Language :: Python :: 2.7',
'Programming Language :: Cython',
'Development Status :: 5 - Production/Stable',
'License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)',
'Intended Audience :: Science/Research',
'Topic :: Scientific/Engineering',
'Topic :: Scientific/Engineering :: Astronomy',
'Topic :: Scientific/Engineering :: Physics'
],
'packages':['ic','evolve','acceleraton', 'cic','potential','box_smooth'],
'ext_modules': ext_modules,
'include_dirs': include_dirs,
'cmdclass' : {'build_ext': build_ext},
}
if __name__ == '__main__':
setup(**setup_args)