Scripts for calculating the coverage of chrY in targetted exome sequencing analysis results
using bedtools genomecov
and bedtools coverage
http://bedtools.readthedocs.io/en/latest/content/tools/genomecov.html
http://bedtools.readthedocs.io/en/latest/content/tools/coverage.html
input files: .bam formatted mapped reads, .bed list of exome target regions, hg19 chrom sizes file