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@ARTICLE{tack_can_2011,author = {Tack, Ayco J M and Gripenberg, Sofia and Roslin, Tomas},
title = {Can we predict indirect interactions from quantitative food webs?–an experimental approach.},
issn = {1365-2656},
number = {1},
month = {jan},
volume = {80},
link = {http://www.ncbi.nlm.nih.gov/pubmed/20796204},
year = {2011},
journal = {The Journal of animal ecology},
}
@BOOK{hubbell_unified_2001,publisher = {Princeton University Press},
isbn = {0691021287},
title = {The Unified Neutral Theory of Biodiversity and Biogeography},
author = {Hubbell, Stephen P},
address = {Princeton},
}
@ARTICLE{stouffer_quantitative_2005,keyword = {complex networks, empirical, food-web patterns, food webs, food-web structure, model vs, network structure, scaling, universality},
author = {Stouffer, Daniel B and Camacho, Juan and Guimera, R and Ng, C A and Amaral, Luís A Nunes},
journal = {Ecology},
title = {Quantitative patterns in the structure of model and empirical food webs},
number = {5},
volume = {86},
link = {http://www.esajournals.org/doi/pdf/10.1890/04-0957},
year = {2005},
pages = {1301–1311},
}
@ARTICLE{yeakel_probabilistic_2012,author = {Yeakel, J. D. and Guimaraes, P. R. and Novak, M. and Fox-Dobbs, K. and Koch, P. L.},
issn = {1742-5689},
month = {jul},
link = {http://rsif.royalsocietypublishing.org/cgi/content/abstract/rsif.2012.0481v1},
pages = {rsif.2012.0481–},
year = {2012},
title = {Probabilistic patterns of interaction: the effects of link-strength variability on food web structure},
journal = {Journal of The Royal Society Interface},
}
@ARTICLE{ings_ecological_2009,author = {Ings, Thomas C and Montoya, José M and Bascompte, Jordi and Blüthgen, Nico and Brown, Lee and Dormann, Carsten F and Edwards, Fran{\textbackslash}ccois and Figueroa, David and Jacob, Ute and Jones, J Iwan and Lauridsen, Rasmus B and Ledger, Mark E and Lewis, Hannah M and Olesen, Jens M and van Veen, Frank J F and Warren, Phil H and Woodward, Guy},
keyword = {Animal, animal physiology, Animal: physiology, Animals, Behavior, Biological Evolution, Ecology, ecology methods, Ecology: methods, ecology trends, Ecology: trends, evolution, Food Chain},
title = {Ecological networks–beyond food webs.},
issn = {13652656},
number = {1},
volume = {78},
link = {http://www.ncbi.nlm.nih.gov/pubmed/19120606},
year = {2009},
journal = {Journal of Animal Ecology},
}
@ARTICLE{schleuning_specialization_2012,author = {Schleuning, Matthias and Fründ, Jochen and Klein, Alexandra-maria and Abrahamczyk, Stefan and Alarcón, Ruben and Albrecht, Matthias and Andersson, Georg K S and Bazarian, Simone and Böhning-Gaese, Katrin and Bommarco, Riccardo and Dalsgaard, Bo and Dehling, D Matthias and Gotlieb, Ariella and Hagen, Melanie and Hickler, Thomas and Holzschuh, Andrea and Kaiser-Bunbury, Christopher N and Kreft, Holger and Morris, Rebecca J and Sandel, Brody and Sutherland, William J and Svenning, Jens-christian and Tscharntke, Teja and Watts, Stella and Weiner, Christiane N and Werner, Michael and Williams, Neal M and Winqvist, Camilla and Dormann, Carsten F and Blüthgen, Nico},
title = {Specialization of Mutualistic Interaction Networks Decreases toward Tropical Latitudes.},
issn = {1879-0445},
number = {20},
month = {oct},
volume = {22},
link = {http://www.ncbi.nlm.nih.gov/pubmed/22981771},
pages = {1925–31},
year = {2012},
journal = {Current biology},
}
@ARTICLE{rohr_modeling_2010,author = {Rohr, Rudolf Philippe and Scherer, Heike and Kehrli, Patrik and Mazza, Christian and Bersier, Louis-Félix},
keyword = {Animals, Bayes Theorem, Biological, Body Size, Food Chain, Markov Chains, Models, Monte Carlo Method, Predatory Behavior, Species Specificity},
title = {Modeling food webs: exploring unexplained structure using latent traits.},
issn = {1537-5323},
number = {2},
month = {aug},
volume = {176},
link = {http://www.ncbi.nlm.nih.gov/pubmed/20540609},
pages = {170–7},
year = {2010},
journal = {The American naturalist},
}
@ARTICLE{woodward_climate_2012,author = {Woodward, G. and Brown, L. E. and Edwards, F. K. and Hudson, L. N. and Milner, A. M. and Reuman, D. C. and Ledger, M. E.},
title = {Climate change impacts in multispecies systems: drought alters food web size structure in a field experiment},
issn = {0962-8436},
number = {1605},
month = {sep},
volume = {367},
link = {http://rstb.royalsocietypublishing.org/content/367/1605/2990.short?rss=1},
pages = {2990–2997},
year = {2012},
journal = {Philosophical Transactions of the Royal Society B: Biological Sciences},
}
@ARTICLE{schleuning_specialization_2011,author = {Schleuning, Matthias and Blüthgen, Nico and Flörchinger, Martina and Braun, Julius and Schaefer, H Martin and Böhning-Gaese, Katrin},
title = {Specialization and interaction strength in a tropical plant-frugivore network differ among forest strata},
journal = {Ecology},
issn = {0012-9658},
number = {1},
month = {may},
volume = {92},
link = {http://www.esajournals.org/doi/abs/10.1890/09-1842.1},
year = {2011},
pages = {26–36},
}
@ARTICLE{gilman_framework_2010,author = {Gilman, Sarah E and Urban, Mark C and Tewksbury, Joshua and Gilchrist, George W and Holt, Robert D},
keyword = {Animal, Animals, Behavior, Biological, Climate Change, Demography, Ecosystem, Human Activities, Models},
title = {A framework for community interactions under climate change.},
issn = {0169-5347},
number = {6},
month = {jun},
volume = {25},
link = {http://www.ncbi.nlm.nih.gov/pubmed/20392517},
pages = {325–331},
year = {2010},
journal = {Trends in Ecology \& Evolution},
}
@ARTICLE{allesina_competitive_2011,author = {Allesina, Stefano and Levine, {J.M.}},
title = {A competitive network theory of species diversity},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
issn = {0027-8424},
number = {14},
volume = {108},
link = {http://www.pnas.org/content/108/14/5638.short},
year = {2011},
pages = {5638},
}
@INCOLLECTION{dunne_network_2006,publisher = {Oxford University Press},
author = {Dunne, Jennifer A},
booktitle = {Ecological networks: Linking structure and dynamics},
title = {The Network Structure of Food Webs},
editor = {Dunne, Jennifer A and Pascual, Mercedes},
year = {2006},
pages = {27–86},
}
@BOOK{price_macroevolutionary_2003,publisher = {Cambridge University Press},
isbn = {0521520371},
title = {Macroevolutionary Theory on Macroecological Patterns},
author = {Price, Peter W},
link = {http://books.google.com/books?hl=fr&lr=&id=qhkmf5oGVhsC&pgis=1},
address = {Cambridge},
}
@ARTICLE{dunne_network_2002,author = {Dunne, Jennifer A and Williams, Richard J and Martinez, Néo D},
journal = {Ecology Letters},
title = {Network structure and biodiversity loss in food webs: robustness increases with connectance},
number = {4},
volume = {5},
year = {2002},
pages = {558–567},
}
@ARTICLE{koch_socially_2011,author = {Koch, Hauke and Schmid-Hempel, Paul},
title = {Socially transmitted gut microbiota protect bumble bees against an intestinal parasite},
month = {nov},
link = {http://www.pnas.org/cgi/content/abstract/1110474108v1},
year = {2011},
journal = {PNAS},
}
@ARTICLE{brose_allometric_2006,author = {Brose, Ulrich and Williams, Richard J and Martinez, Néo D},
keyword = {Animals, Biological, Body Temperature Regulation, Body Weight, Computer Simulation, Food Chain, Invertebrates, Invertebrates: physiology, Models, Population Dynamics, Predatory Behavior, Predatory Behavior: physiology, Vertebrates, Vertebrates: physiology},
title = {Allometric scaling enhances stability in complex food webs.},
issn = {1461-0248},
number = {11},
month = {nov},
volume = {9},
link = {http://www.ncbi.nlm.nih.gov/pubmed/17040325},
pages = {1228–1236},
year = {2006},
journal = {Ecology letters},
}
@ARTICLE{estes_trophic_2011,author = {Estes, James A and Terborgh, John and Brashares, Justin S and Power, Mary E and Berger, Joel and Bond, William J and Carpenter, Stephen R and Essington, Timothy E and Holt, Robert D and Jackson, Jeremy B C and Marquis, Robert J and Oksanen, L. and Oksanen, Tarja and Paine, Robert T and Pikitch, Ellen K and Ripple, William J and Sandin, Stuart A and Scheffer, Marten and Schoener, Thomas W and Shurin, Jonathan B and Sinclair, Anthony R E and Soule, M E and Virtanen, Risto and Wardle, David A},
keyword = {Animals, biodiversity, Biological, Ecosystem, extinction, Feeding Behavior, Food Chain, Humans, Introduced Species, Population Dynamics, Predatory Behavior},
title = {Trophic Downgrading of Planet Earth},
issn = {0036-8075},
number = {6040},
month = {jul},
volume = {333},
link = {http://www.ncbi.nlm.nih.gov/pubmed/21764740 http://www.sciencemag.org/cgi/doi/10.1126/science.1205106},
pages = {301–306},
year = {2011},
journal = {Science},
}
@ARTICLE{angilletta_temperature_2004,note = {{PMID:} 21676736},
language = {en},
shorttitle = {Temperature, Growth Rate, and Body Size in Ectotherms},
title = {Temperature, Growth Rate, and Body Size in Ectotherms: Fitting Pieces of a Life-History Puzzle},
issn = {1540-7063, 1557-7023},
number = {6},
month = {dec},
volume = {44},
pages = {498--509},
link = {http://icb.oxfordjournals.org/content/44/6/498},
author = {Angilletta, Michael J. and Steury, Todd D. and Sears, Michael W.},
year = {2004},
urldate = {2013-05-23},
journal = {Integrative and Comparative Biology},
}
@ARTICLE{eveleigh_fluctuations_2007,author = {Eveleigh, Eldon S and {McCann}, Kevin S and {McCarthy}, Peter C and Pollock, Steven J and Lucarotti, Christopher J and Morin, Benoit and {McDougall}, George a and Strongman, Douglas B and Huber, John T and Umbanhowar, James and Faria, Lucas D B},
keyword = {Abies, Abies: parasitology, Animals, biodiversity, Food Chain, Insects, Insects: physiology, Species Specificity},
title = {Fluctuations in density of an outbreak species drive diversity cascades in food webs.},
issn = {0027-8424},
number = {43},
month = {oct},
volume = {104},
link = {http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2040472&tool=pmcentrez&rendertype=abstract},
pages = {16976–16981},
year = {2007},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
}
@ARTICLE{bluthgen_what_2008,author = {Blüthgen, Nico and Fründ, Jochen and Vázquez, Diego P and Menzel, Florian},
keyword = {Adaptation, Animals, biodiversity, Biological, Biological Evolution, Computer Simulation, Demography, Ecosystem, Food Chain, Models, Physiological, Population Density, Population Dynamics, population growth, Species Specificity},
title = {What do interaction network metrics tell us about specialization and biological traits?},
issn = {0012-9658},
number = {12},
month = {dec},
volume = {89},
link = {http://www.ncbi.nlm.nih.gov/pubmed/19137945},
pages = {3387–99},
year = {2008},
journal = {Ecology},
}
@ARTICLE{gomulkiewicz_hot_2000,author = {Gomulkiewicz, Richard and Thompson, John N and Holt, Robert D and Nuismer, Scott L and Hochberg, Michael E},
journal = {The American Naturalist},
title = {Hot spots, cold spots, and the geographic mosaic theory of coevolution},
volume = {156},
year = {2000},
pages = {156–174},
}
@ARTICLE{herrera_interaction_2002,title = {Interaction of pollinators and herbivores on plant fitness suggests a pathway for correlated evolution of mutualism-and antagonism-related traits},
journal = {Proceedings of the National Academy of Sciences},
author = {Herrera, Carlos M. and Medrano, Monica and Rey, Pedro J. and Sánchez-Lafuente, Alfonso M. and García, María B. and Guitian, Javier and Manzaneda, Antonio J.},
number = {26},
volume = {99},
link = {http://www.pnas.org/content/99/26/16823.short},
year = {2002},
urldate = {2013-12-02},
pages = {16823–16828},
}
@ARTICLE{araujo_using_2011,author = {Araújo, Miguel B and Rozenfeld, Alejandro and Rahbek, Carsten and Marquet, Pablo A},
title = {Using species co-occurrence networks to assess the impacts of climate change},
journal = {Ecography},
issn = {09067590},
number = {6},
month = {dec},
volume = {34},
link = {http://doi.wiley.com/10.1111/j.1600-0587.2011.06919.x},
year = {2011},
}
@ARTICLE{poisot_resource_2011,author = {Poisot, Timothée and Lepennetier, Gildas and Martinez, Esteban and Ramsayer, Johan and Hochberg, Michael E},
title = {Resource availability affects the structure of a natural bacteria-bacteriophage community.},
issn = {1744-{957X}},
number = {2},
month = {oct},
volume = {7},
link = {http://www.ncbi.nlm.nih.gov/pubmed/20961886},
pages = {201–204},
year = {2011},
journal = {Biology Letters},
}
@ARTICLE{baiser_geographic_2012,author = {Baiser, Benjamin and Gotelli, Nicholas J and Buckley, Hannah L. and Miller, Thomas E and Ellison, Aaron M.},
keyword = {2011 blackwell publishing ltd, america, chain length, climate, food web, keystone predation, network structure, north, pitcher plant, sarracenia purpurea},
title = {Geographic variation in network structure of a nearctic aquatic food web},
journal = {Global Ecology and Biogeography},
issn = {1466822X},
number = {5},
month = {may},
volume = {21},
link = {http://doi.wiley.com/10.1111/j.1466-8238.2011.00705.x},
year = {2012},
pages = {579–591},
}
@ARTICLE{memmott_tolerance_2004,author = {Memmott, Jane and Waser, N M and Price, M V},
journal = {Proceedings of the Royal Society B: Biological Sciences},
title = {Tolerance of pollination networks to species extinctions},
number = {1557},
volume = {271},
year = {2004},
pages = {2605–2611},
}
@INCOLLECTION{koen-alonso_process-oriented_2007,publisher = {Springer},
author = {Koen-Alonso, Mariano},
booktitle = {From energetics to ecosystems: the dynamics and structure of ecological systems},
title = {A process-oriented approach to the multispecies functional response},
link = {http://link.springer.com/content/pdf/10.1007/978-1-4020-5337-5_1.pdf},
year = {2007},
urldate = {2013-12-02},
pages = {1–36},
}
@ARTICLE{diniz-filho_macroecology_2008,keyword = {community, global changes, macroecology, methods, Phylogeny, {PNC}, varpart},
author = {Diniz-Filho, José Alexandre Felizola and Bini, Luis Mauricio},
journal = {Global Ecology and Biogeography},
title = {Macroecology, global change and the shadow of forgotten ancestors},
number = {1},
volume = {17},
link = {http://www.blackwell-synergy.com/doi/abs/10.1111/j.1466-8238.2007.00339.x?ai=v6&mi=b6d5l&af=R},
year = {2008},
pages = {11–17},
}
@ARTICLE{singer_disentangling_2004,author = {Singer, Michael C and Carriere, Y and Theuring, C and Hartmann, T},
journal = {The American Naturalist},
title = {Disentangling food quality from resistance against parasitoids: diet choice by a generalist caterpillar},
number = {3},
volume = {164},
year = {2004},
pages = {423–429},
}
@ARTICLE{allesina_stability_2012,author = {Allesina, Stefano and Tang, Si},
shorttitle = {Nature},
title = {Stability criteria for complex ecosystems.},
issn = {1476-4687},
number = {7388},
month = {feb},
volume = {483},
link = {http://dx.doi.org/10.1038/nature10832},
year = {2012},
journal = {Nature},
}
@ARTICLE{vazquez_species_2005,author = {Vazquez, Diego P. and Poulin, Robert and Krasnov, Boris R. and Shenbrot, Georgy I.},
title = {Species abundance and the distribution of specialization in host-parasite interaction networks},
journal = {Journal of Animal Ecology},
issn = {0021-8790},
number = {5},
month = {sep},
volume = {74},
link = {http://doi.wiley.com/10.1111/j.1365-2656.2005.00992.x},
year = {2005},
pages = {946–955},
}
@ARTICLE{vazquez_species_2007,author = {Vázquez, Diego P and Melián, Carlos J and Williams, Neal M and Blüthgen, Nico and Krasnov, Boris R and Poulin, Robert},
journal = {Oikos},
title = {Species abundance and asymmetric interaction strength in ecological networks},
number = {7},
volume = {116},
year = {2007},
pages = {1120–1127},
}
@ARTICLE{williams_simple_2000,author = {Williams, {RJ} and Martinez, {ND}},
journal = {Nature},
title = {Simple rules yield complex food webs},
number = {March},
volume = {404},
link = {http://userwww.sfsu.edu/ parker/bio840/pdfs/WilliamsMartinez2000.pdf},
year = {2000},
pages = {180–183},
}
@ARTICLE{poisot_dissimilarity_2012,author = {Poisot, Timothée and Canard, Elsa and Mouillot, David and Mouquet, Nicolas and Gravel, Dominique},
title = {The dissimilarity of species interaction networks.},
issn = {1461-0248},
number = {12},
month = {sep},
volume = {15},
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year = {2013},
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pages = {16503–16507},
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copyright = {© 2013 The Authors},
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issn = {1600-0706},
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year = {2013},
urldate = {2013-05-28},
journal = {Oikos},
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number = {4},
month = {apr},
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pages = {1097–1108},
year = {2011},
journal = {Journal of Animal Ecology},
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year = {2011},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
}
@ARTICLE{duffy_functional_2007,keyword = {Ecosystem functioning, grazing, horizontal diversity},
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journal = {{PLoS} Computational Biology},
issn = {1553-7358},
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link = {http://dx.plos.org/10.1371/journal.pcbi.1002321},
editor = {Meyers, Lauren Ancel},
year = {2011},
pages = {e1002321},
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@ARTICLE{burdon_coevolution_2009,keyword = {coevolution},
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urldate = {2013-12-02},
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keyword = {Animals, biodiversity, Biological, Classification, Ecosystem, extinction, Feeding Behavior, Phylogeny, Plants, Plants: classification, Plants: metabolism, Pollen, Pollen: metabolism, Species Specificity, Symbiosis, Symbiosis: physiology},
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year = {2007},
journal = {Nature},
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journal = {Science},
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journal = {Methods in Ecology and Evolution},
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year = {2013},
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keyword = {Animals, Biological, Conservation of Natural Resources, Ecology, evolution, Genetic Variation, Models, Sample Size, Species Specificity},
title = {The ecology of individuals: incidence and implications of individual specialization.},
issn = {0003-0147},
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month = {jan},
volume = {161},
link = {http://www.ncbi.nlm.nih.gov/pubmed/12650459},
pages = {1–28},
year = {2003},
journal = {The American Naturalist},
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year = {2011},
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}
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year = {2012},
journal = {Ecology letters},
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keyword = {Aphids, food web, indirect effects, parasitoid, resource competition, Secondary},
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issn = {1744-{957X}},
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year = {2012},
journal = {Biology letters},
}
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title = {Field parameterization and experimental test of the neutral theory of biodiversity.},
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year = {2005},
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@ARTICLE{olesen_missing_2011,author = {Olesen, Jens M and Bascompte, Jordi and Dupont, Yoko L and Elberling, Heidi and Rasmussen, Claus and Jordano, Pedro},
keyword = {Animals, Arctic Regions, Birds, Demography, Ecosystem, Insects, mammals, Mediterranean Region, Pollination, Pollination: physiology, Seeds, Seeds: physiology, Symbiosis, Symbiosis: physiology},
title = {Missing and forbidden links in mutualistic networks.},
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@ARTICLE{olivier_are_2012,author = {Olivier, Lesouhaitier},
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@ARTICLE{thuiller_road_2013,language = {en},
copyright = {© 2013 John Wiley \& Sons {Ltd/CNRS}},
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year = {2013},
urldate = {2013-05-23},
keyword = {Biotic interactions, hybrid modelling, metacommunity, rapid adaptation, species distribution},
journal = {Ecology Letters},
}
@ARTICLE{berlow_simple_2009,author = {Berlow, Eric L and Dunne, Jennifer a and Martinez, Neo D and Stark, Philip B and Williams, Richard J and Brose, Ulrich},
keyword = {Animals, Biological, Biomass, Body Size, Ecology, extinction, Feeding Behavior, Food Chain, Models, Population Dynamics, Theoretical},
title = {Simple prediction of interaction strengths in complex food webs.},
issn = {1091-6490},
number = {1},
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year = {2009},
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title = {Why intraspecific trait variation matters in community ecology.},
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@ARTICLE{gravel_trophic_2011,author = {Gravel, Dominique and Massol, Fran{\textbackslash}ccois and Canard, Elsa and Mouillot, David and Mouquet, Nicolas},
keyword = {Animals, biodiversity, Biological, Computer Simulation, diet, Food Chain, Geography, Models, phylogeography},
title = {Trophic theory of island biogeography.},
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journal = {Ecology Letters},
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@ARTICLE{eklof_relevance_2011,author = {Eklof, Anna and Helmus, Matthew R. and Moore, M. and Allesina, Stefano and Eklöf, Anna},
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issn = {1471-2954},
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pages = {1588–1596},
year = {2011},
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journal = {Proceedings of the Royal Society B: Biological Sciences},
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@ARTICLE{janzen_neotropical_1982,shorttitle = {Neotropical anachronisms},
title = {Neotropical anachronisms: the fruits the gomphotheres ate},
journal = {Science},
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number = {4528},
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link = {http://bio.research.ucsc.edu/people/doaklab/extras/rockin/janzen-martin-1982.pdf},
year = {1982},
urldate = {2013-12-02},
pages = {19–27},
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@ARTICLE{singer_tritrophic_2012,author = {Singer, Michael S and Farkas, Timothy E and Skorik, Christian M and Mooney, Kailen a},
keyword = {density-dependent predation, herbivory, high-mortality hypothesis, ification, interaction mod-, rect effect, slow-growth, trait-related indi-, trophic cascade},
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title = {Predator-prey role reversals, juvenile experience and adult antipredator behaviour},
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issn = {2045-2322},
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year = {2012},
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year = {2005},
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keyword = {Adaptation, Animals, Argentina, Bees, Bees: physiology, Biological, Computer Simulation, Ecosystem, Food Chain, Great Britain, Models, Physiological, Plant Physiological Phenomena, Pollen, Population Dynamics, Species Specificity},
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year = {2006},
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}