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ChangeLog
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------------------------------------------------------------------------
r230 | rguimera | 2011-02-14 16:29:35 +0100 (Mon, 14 Feb 2011) | 2 lines
Changed paths:
M /trunk/src/recommend.c
A slightly faster version of multi-recommend. Still needs to be faster, probably by passing the matrix of ignored values of r and l, the same way that G2G is passed...
------------------------------------------------------------------------
r229 | rguimera | 2011-02-14 13:50:16 +0100 (Mon, 14 Feb 2011) | 2 lines
Changed paths:
M /trunk/recommender/main_multi_recommend_2.c
M /trunk/src/recommend.c
New version of multi-recommender. Some issues fixed, but needs to be MUCH faster...
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r228 | rguimera | 2011-02-11 13:42:23 +0100 (Fri, 11 Feb 2011) | 2 lines
Changed paths:
M /trunk/README
Trying to get LastChangedDate to work.
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r227 | rguimera | 2011-02-11 13:41:24 +0100 (Fri, 11 Feb 2011) | 2 lines
Changed paths:
M /trunk/ChangeLog
M /trunk/README
M /trunk/src/recommend.c
Minor changes.
------------------------------------------------------------------------
r226 | rguimera | 2011-02-11 13:19:55 +0100 (Fri, 11 Feb 2011) | 2 lines
Changed paths:
M /trunk/ChangeLog
M /trunk/src/recommend.c
Bug fixed in MultiLinkScore2State (scores where not properly calculated).
------------------------------------------------------------------------
r225 | rguimera | 2011-02-09 10:04:57 +0100 (Wed, 09 Feb 2011) | 2 lines
Changed paths:
A /trunk/lib/search.in.h
Added gnulib file required for compilation.
------------------------------------------------------------------------
r224 | rguimera | 2011-02-08 17:17:17 +0100 (Tue, 08 Feb 2011) | 2 lines
Changed paths:
M /trunk/ChangeLog
M /trunk/Makefile.am
A /trunk/arg-nonnull.h
A /trunk/c++defs.h
M /trunk/configure.in
M /trunk/lib/Makefile.am
M /trunk/lib/dummy.c
D /trunk/lib/search_.h
M /trunk/lib/tsearch.c
D /trunk/link-warning.h
A /trunk/m4/00gnulib.m4
D /trunk/m4/absolute-header.m4
M /trunk/m4/gnulib-cache.m4
M /trunk/m4/gnulib-common.m4
M /trunk/m4/gnulib-comp.m4
M /trunk/m4/gnulib-tool.m4
A /trunk/m4/include_next.m4
A /trunk/m4/onceonly.m4
D /trunk/m4/onceonly_2_57.m4
M /trunk/m4/search_h.m4
M /trunk/m4/tsearch.m4
A /trunk/m4/warn-on-use.m4
A /trunk/warn-on-use.h
gnulib-update to try and compile this crap in windowz.
------------------------------------------------------------------------
r223 | rguimera | 2011-02-08 15:45:25 +0100 (Tue, 08 Feb 2011) | 3 lines
Changed paths:
M /trunk/recommender/Makefile.am
A /trunk/recommender/main_multi_recommend_2.c
M /trunk/src/graph.c
M /trunk/src/missing.c
M /trunk/src/missing.h
M /trunk/src/recommend.c
M /trunk/src/recommend.h
M /trunk/src/tools.c
M /trunk/src/tools.h
First compilable version of the 2-state multi-recommender (that is, several recommendations at a time).
WARNING: NEEDS TESTING SINCE IT MAY BE BUGGY!!!!!!
------------------------------------------------------------------------
r221 | rguimera | 2010-05-07 14:52:55 +0200 (Fri, 07 May 2010) | 2 lines
Changed paths:
M /trunk/configure.in
New version.
------------------------------------------------------------------------
r220 | rguimera | 2010-05-05 11:17:42 +0200 (Wed, 05 May 2010) | 3 lines
Changed paths:
M /trunk/README
M /trunk/reliability/Makefile.am
D /trunk/reliability/main_links.c
D /trunk/reliability/main_reconstruct.c
A /trunk/reliability/main_reliability_links.c (from /trunk/reliability/main_links.c:219)
A /trunk/reliability/main_reliability_reconstruct.c (from /trunk/reliability/main_reconstruct.c:219)
Added reliability section to README.
Reliability executables renamed.
------------------------------------------------------------------------
r219 | rguimera | 2010-04-28 16:05:59 +0200 (Wed, 28 Apr 2010) | 1 line
Changed paths:
M /trunk/README
M /trunk/bipartmod/main_bipartmod.c
M /trunk/configure.in
M /trunk/netcarto/main_netcarto.c
M /trunk/netcarto/main_netcarto_cl.c
M /trunk/recommender/main_recommend_2.c
M /trunk/reliability/main_links.c
M /trunk/reliability/main_reconstruct.c
M /trunk/src/bipartite.c
M /trunk/src/bipartite.h
M /trunk/src/graph.c
M /trunk/src/graph.h
M /trunk/src/layout.c
M /trunk/src/layout.h
M /trunk/src/missing.c
M /trunk/src/missing.h
M /trunk/src/models.c
M /trunk/src/models.h
M /trunk/src/modules.c
M /trunk/src/modules.h
M /trunk/src/recommend.c
M /trunk/src/recommend.h
M /trunk/src/tools.c
M /trunk/src/tools.h
M /trunk/test/main_bipart1.c
M /trunk/test/main_bipart2.c
M /trunk/test/main_coclas.c
M /trunk/test/main_graph1.c
M /trunk/test/main_netsum.c
A /trunk/test/test_graph1.dat (from /branches/prng_free/test/test_graph1.dat:218)
M /trunk/utils/main_modularbipart.c
M /trunk/utils/main_multinetlayout.c
M /trunk/utils/main_netcompare.c
M /trunk/utils/main_netlayout.c
M /trunk/utils/main_netrandomize.c
Merged prng_free branch.
------------------------------------------------------------------------
r215 | rguimera | 2010-04-16 16:57:21 +0200 (Fri, 16 Apr 2010) | 2 lines
Changed paths:
M /trunk/configure.in
M /trunk/recommender/main_recommend_2.c
Getting ready for a bug-fix release.
------------------------------------------------------------------------
r214 | rguimera | 2010-04-16 16:52:06 +0200 (Fri, 16 Apr 2010) | 2 lines
Changed paths:
M /trunk/src/bipartite.c
M /trunk/src/recommend.c
Fixed important bug in RemoveNodeBipart (needed to renumber nodes after removal!!!).
------------------------------------------------------------------------
r213 | rguimera | 2010-04-16 16:50:45 +0200 (Fri, 16 Apr 2010) | 3 lines
Changed paths:
M /trunk/README
Updated README.
------------------------------------------------------------------------
r212 | rguimera | 2010-04-16 11:16:33 +0200 (Fri, 16 Apr 2010) | 1 line
Changed paths:
M /trunk/src/bipartite.c
M /trunk/src/graph.c
M /trunk/src/recommend.c
M /trunk/src/recommend.h
Trying to fix a segmentation fault.
------------------------------------------------------------------------
r211 | rguimera | 2010-04-14 16:20:36 +0200 (Wed, 14 Apr 2010) | 1 line
Changed paths:
M /trunk/src/bipartite.c
M /trunk/src/bipartite.h
M /trunk/src/graph.c
M /trunk/src/recommend.c
Fixed memory leak.
------------------------------------------------------------------------
r210 | rguimera | 2010-04-13 18:14:32 +0200 (Tue, 13 Apr 2010) | 2 lines
Changed paths:
M /trunk/src/recommend.c
Added exception for 1-node networks in the recommender.
------------------------------------------------------------------------
r209 | rguimera | 2010-04-13 17:11:13 +0200 (Tue, 13 Apr 2010) | 2 lines
Changed paths:
M /trunk/recommender/main_recommend_2.c
M /trunk/src/missing.c
M /trunk/src/missing.h
M /trunk/src/recommend.c
M /trunk/src/recommend.h
M /trunk/utils/main_netprop.c
Added thermalization to 2-state recommender. Fixed some include problems in missing.h.
------------------------------------------------------------------------
r208 | rguimera | 2010-04-13 16:32:30 +0200 (Tue, 13 Apr 2010) | 2 lines
Changed paths:
M /trunk/src/missing.c
M /trunk/src/missing.h
M /trunk/src/recommend.c
M /trunk/src/recommend.h
Added decorrelation step calculation to the 2-state recommender.
------------------------------------------------------------------------
r207 | rguimera | 2010-04-09 14:36:42 +0200 (Fri, 09 Apr 2010) | 2 lines
Changed paths:
M /trunk/recommender/main_recommend_2.c
M /trunk/src/recommend.c
M /trunk/src/recommend.h
First working version of the 2-state recommender (without thermalization and decorrelation step, yet).
------------------------------------------------------------------------
r206 | rguimera | 2010-04-07 16:28:44 +0200 (Wed, 07 Apr 2010) | 1 line
Changed paths:
A /trunk/recommender/recommend_test.dat
Added test network for the recommender.
------------------------------------------------------------------------
r205 | rguimera | 2010-04-07 15:22:05 +0200 (Wed, 07 Apr 2010) | 2 lines
Changed paths:
M /trunk/Makefile.am
M /trunk/configure.in
A /trunk/recommender
A /trunk/recommender/Makefile.am
A /trunk/recommender/main_recommend_2.c
M /trunk/src/recommend.c
M /trunk/src/recommend.h
Working on the 2-state recommender. This may not compile!
------------------------------------------------------------------------
r204 | rguimera | 2010-01-25 08:16:12 +0100 (Mon, 25 Jan 2010) | 2 lines
Changed paths:
M /trunk/utils/main_multinetlayout.c
M /trunk/utils/main_netlayout.c
Small change (cannot understand how this was compiling before).
------------------------------------------------------------------------
r203 | rguimera | 2009-09-25 19:43:35 +0200 (Fri, 25 Sep 2009) | 2 lines
Changed paths:
M /trunk/src/missing.c
M /trunk/src/tools.c
Fixed a couple of numerical precision errors.
------------------------------------------------------------------------
r202 | rguimera | 2009-09-24 01:34:12 +0200 (Thu, 24 Sep 2009) | 2 lines
Changed paths:
M /trunk/reliability/main_links.c
M /trunk/src/models.c
M /trunk/src/models.h
Some changes :)
------------------------------------------------------------------------
r201 | rguimera | 2009-09-19 01:06:29 +0200 (Sat, 19 Sep 2009) | 2 lines
Changed paths:
M /trunk/src/models.c
M /trunk/src/models.h
Functions for generating block graphs, including Girvan-Newman networks.
------------------------------------------------------------------------
r199 | rguimera | 2009-09-17 18:58:12 +0200 (Thu, 17 Sep 2009) | 2 lines
Changed paths:
M /trunk/configure.in
Getting ready for the 0.3.1 bug-fix release.
------------------------------------------------------------------------
r198 | rguimera | 2009-09-17 18:54:57 +0200 (Thu, 17 Sep 2009) | 2 lines
Changed paths:
M /trunk/src/bipartite.c
Fixed (hopefully) bug that prevented SACommunityIdentBipart from stopping when being used at Ti=0.
------------------------------------------------------------------------
r196 | rguimera | 2009-09-17 18:28:19 +0200 (Thu, 17 Sep 2009) | 2 lines
Changed paths:
M /trunk/configure.in
Getting ready for 0.3 release.
------------------------------------------------------------------------
r195 | rguimera | 2009-09-17 16:41:12 +0200 (Thu, 17 Sep 2009) | 2 lines
Changed paths:
M /trunk/src/models.c
M /trunk/src/models.h
Added preferential attachment model.
------------------------------------------------------------------------
r194 | rguimera | 2009-09-05 02:29:44 +0200 (Sat, 05 Sep 2009) | 2 lines
Changed paths:
M /trunk/src/Makefile.am
A /trunk/src/recommend.c
A /trunk/src/recommend.h
First steps towards recommender.
------------------------------------------------------------------------
r193 | rguimera | 2009-06-24 18:29:00 +0200 (Wed, 24 Jun 2009) | 1 line
Changed paths:
M /trunk/utils/Makefile.am
D /trunk/utils/main_missing.c
Removed main_missing.c from utils, because there is a better version in /reliability.
------------------------------------------------------------------------
r192 | irmak | 2009-06-02 03:49:10 +0200 (Tue, 02 Jun 2009) | 3 lines
Changed paths:
M /trunk/src/bipartite.c
slight modification to bipartite.c to allow steepest descent
------------------------------------------------------------------------
r191 | irmak | 2009-05-27 00:06:05 +0200 (Wed, 27 May 2009) | 1 line
Changed paths:
M /trunk/src/bipartite.c
Irmak: Split move in weighted bipartite partition simulated annealing changed to be automatically accepted only above zero (instead of -epsilon).
------------------------------------------------------------------------
r190 | rguimera | 2009-05-22 19:36:14 +0200 (Fri, 22 May 2009) | 2 lines
Changed paths:
M /trunk/utils/Makefile.am
A /trunk/utils/main_multinetlayout.c
Added utility to layout multiple (overlapping) networks at the same time.
------------------------------------------------------------------------
r189 | rguimera | 2009-05-22 19:30:44 +0200 (Fri, 22 May 2009) | 2 lines
Changed paths:
M /trunk/test/Makefile.am
A /trunk/test/main_netsum.c
Added test to check the network sum function.
------------------------------------------------------------------------
r188 | rguimera | 2009-05-22 01:27:30 +0200 (Fri, 22 May 2009) | 2 lines
Changed paths:
M /trunk/src/graph.c
M /trunk/src/graph.h
Added AddTwoNetworks function.
------------------------------------------------------------------------
r187 | rguimera | 2009-05-22 00:28:13 +0200 (Fri, 22 May 2009) | 2 lines
Changed paths:
M /trunk/src/layout.c
M /trunk/src/layout.h
M /trunk/utils/Makefile.am
A /trunk/utils/main_netlayout.c
Fixed some bugs in the layout functions. Working version of netlayout in utils.
------------------------------------------------------------------------
r186 | rguimera | 2009-05-22 00:06:46 +0200 (Fri, 22 May 2009) | 2 lines
Changed paths:
M /trunk/src/Makefile.am
A /trunk/src/layout.c (from /trunk/src/visual.c:185)
A /trunk/src/layout.h
D /trunk/src/visual.c
Visualization libraries renamed layout libraries.
------------------------------------------------------------------------
r185 | rguimera | 2009-05-21 23:59:22 +0200 (Thu, 21 May 2009) | 2 lines
Changed paths:
M /trunk/src/Makefile.am
M /trunk/src/graph.c
M /trunk/src/graph.h
M /trunk/src/missing.h
A /trunk/src/visual.c
Added old version (slightly twiked) of the visual functions library.
------------------------------------------------------------------------
r184 | rguimera | 2009-05-21 23:56:58 +0200 (Thu, 21 May 2009) | 2 lines
Changed paths:
A /trunk/reliability/main_links.c
Forgot to add this.
------------------------------------------------------------------------
r183 | rguimera | 2009-05-13 18:36:19 +0200 (Wed, 13 May 2009) | 2 lines
Changed paths:
M /trunk/reliability/Makefile.am
Preliminary version of link reliability program (TODO: output should be sorted).
------------------------------------------------------------------------
r182 | rguimera | 2009-05-11 23:44:01 +0200 (Mon, 11 May 2009) | 2 lines
Changed paths:
M /trunk/Makefile.am
M /trunk/configure.in
A /trunk/reliability
A /trunk/reliability/Makefile.am
A /trunk/reliability/main_reconstruct.c
M /trunk/src/missing.c
Added network reconstruction program.
------------------------------------------------------------------------
r181 | rguimera | 2009-04-22 02:54:41 +0200 (Wed, 22 Apr 2009) | 2 lines
Changed paths:
M /trunk/src/missing.c
Some comments added.
------------------------------------------------------------------------
r180 | irmak | 2009-03-26 23:11:53 +0100 (Thu, 26 Mar 2009) | 1 line
Changed paths:
M /trunk/src/bipartite.c
M /trunk/src/bipartite.h
M /trunk/src/graph.c
M /trunk/src/graph.h
Added Community Identification for weighted bipartite networks
------------------------------------------------------------------------
r179 | rdm | 2009-03-13 23:26:43 +0100 (Fri, 13 Mar 2009) | 1 line
Changed paths:
M /trunk/utils/main_netprop.c
Fixed small bug in main_netprop.c
------------------------------------------------------------------------
r178 | jduch | 2009-03-13 22:08:51 +0100 (Fri, 13 Mar 2009) | 1 line
Changed paths:
M /trunk/src/graph.c
M /trunk/src/graph.h
M /trunk/test/main_giant.c
M /trunk/utils/main_netprop.c
Added function to get all the connected components
------------------------------------------------------------------------
r177 | rguimera | 2009-03-13 17:16:40 +0100 (Fri, 13 Mar 2009) | 2 lines
Changed paths:
M /trunk/ChangeLog
M /trunk/src/modules.c
M /trunk/utils/Makefile.am
D /trunk/utils/main_betweenness.c
A /trunk/utils/main_nodeprop.c (from /trunk/utils/main_betweenness.c:176)
utils/betweenness renamed to nodeprop. Now it calculates degree and betweenness.
------------------------------------------------------------------------
r176 | rguimera | 2009-03-10 00:38:19 +0100 (Tue, 10 Mar 2009) | 2 lines
Changed paths:
M /trunk/src/missing.c
Network reconstruction algorithm made a little more exhaustive (and tunable).
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r175 | rguimera | 2009-03-06 21:38:31 +0100 (Fri, 06 Mar 2009) | 2 lines
Changed paths:
M /trunk/src/matrix.c
M /trunk/src/matrix.h
M /trunk/test/main_lapspec.c
Added Synchronizability (lambda_N / lambda_2) to matrix.* and addapted lapspec test.
------------------------------------------------------------------------
r174 | rguimera | 2009-03-06 17:57:15 +0100 (Fri, 06 Mar 2009) | 2 lines
Changed paths:
M /trunk/utils/Makefile.am
A /trunk/utils/main_lapspec.c
M /trunk/utils/main_netprop.c
Added util to calculate the stectrum of the Laplacian.
------------------------------------------------------------------------
r173 | rguimera | 2009-03-06 17:49:22 +0100 (Fri, 06 Mar 2009) | 4 lines
Changed paths:
M /trunk/src/graph.c
M /trunk/src/graph.h
M /trunk/test/main_betweenness.c
M /trunk/utils/main_netprop.c
Added AverageSquaredDegree (and corrected AverageDegree) in graph.*.
Minor change in test/betweenness.
Got rid of modularity in utils/netprop, and added a few more descriptive properties.
------------------------------------------------------------------------
r172 | rguimera | 2009-03-06 00:15:39 +0100 (Fri, 06 Mar 2009) | 2 lines
Changed paths:
M /trunk/src/Makefile.am
A /trunk/src/matrix.c
A /trunk/src/matrix.h
M /trunk/test/Makefile.am
A /trunk/test/main_lapspec.c
Added matrix functions (adjacency, laplacian, and laplacian spectrum), and a test program.
------------------------------------------------------------------------
r171 | rguimera | 2009-03-04 22:37:22 +0100 (Wed, 04 Mar 2009) | 2 lines
Changed paths:
M /trunk/src/missing.c
New version of the network reconstruction function based on network score maximization.
------------------------------------------------------------------------
r170 | rguimera | 2009-03-04 17:51:25 +0100 (Wed, 04 Mar 2009) | 1 line
Changed paths:
M /trunk/src/missing.c
M /trunk/src/missing.h
First attempts to reconstruct networks based on the whole network score.
------------------------------------------------------------------------
r169 | rguimera | 2009-03-03 18:09:13 +0100 (Tue, 03 Mar 2009) | 2 lines
Changed paths:
A /trunk/utils/main_modularbipart.c
That is, NOW I added the util to create modular bipartite networks.
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r168 | rguimera | 2009-03-03 18:08:35 +0100 (Tue, 03 Mar 2009) | 2 lines
Changed paths:
M /trunk/utils/Makefile.am
Added util to create modular bipartite networks.
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r167 | rguimera | 2009-03-03 17:38:20 +0100 (Tue, 03 Mar 2009) | 2 lines
Changed paths:
M /trunk/src/missing.c
M /trunk/src/missing.h
M /trunk/utils/main_missing.c
Added verbose_sw (to control the amount of screen output) to a bunch of missing.c functions.
------------------------------------------------------------------------
r166 | rguimera | 2009-03-03 16:53:16 +0100 (Tue, 03 Mar 2009) | 2 lines
Changed paths:
M /trunk/src/missing.c
M /trunk/src/missing.h
First seemingly non-buggy version of NetworkScore.
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r165 | rguimera | 2009-03-03 02:04:42 +0100 (Tue, 03 Mar 2009) | 2 lines
Changed paths:
M /trunk/configure.in
Changed to version 0.2.
------------------------------------------------------------------------
r164 | rguimera | 2009-03-03 02:02:47 +0100 (Tue, 03 Mar 2009) | 4 lines
Changed paths:
M /trunk/src/missing.c
M /trunk/src/missing.h
M /trunk/utils/main_missing.c
MissingLinks and related functions' names changed to LinkScore.
Added NetworkScore.
Modified utils/main_missing.c accordingly.
------------------------------------------------------------------------
r163 | rguimera | 2009-03-03 00:28:18 +0100 (Tue, 03 Mar 2009) | 3 lines
Changed paths:
M /trunk/README
M /trunk/utils/Makefile.am
A /trunk/utils/main_netrandomize.c
Added network randomization util.
Changed readme accordingly.
------------------------------------------------------------------------
r162 | rguimera | 2009-02-13 18:16:02 +0100 (Fri, 13 Feb 2009) | 4 lines
Changed paths:
M /trunk/src/graph.c
Fixed Jaccard Index so it is 0 if the two nodes don't have any common
neighbors (even if the denominator is also 0, in which case it was
returning nan before).
------------------------------------------------------------------------
r161 | rguimera | 2009-02-12 02:52:25 +0100 (Thu, 12 Feb 2009) | 2 lines
Changed paths:
M /trunk/src/missing.c
M /trunk/utils/Makefile.am
A /trunk/utils/main_netprop.c
New util to calculate global network properties, and tweaking of missing.c.
------------------------------------------------------------------------
r160 | rguimera | 2009-02-11 23:07:07 +0100 (Wed, 11 Feb 2009) | 3 lines
Changed paths:
D /trunk/config.guess
D /trunk/config.sub
M /trunk/src/missing.c
M /trunk/src/missing.h
Added NetFromBMSScores to missing.
Removed automatically generated files.
------------------------------------------------------------------------
r159 | rguimera | 2009-02-10 16:53:54 +0100 (Tue, 10 Feb 2009) | 2 lines
Changed paths:
M /trunk/utils/Makefile.am
A /trunk/utils/main_countlinks.c
Added util to count nodes and links in a network.
------------------------------------------------------------------------
r158 | rguimera | 2009-02-03 01:27:16 +0100 (Tue, 03 Feb 2009) | 3 lines
Changed paths:
M /trunk/src/graph.c
M /trunk/src/graph.h
M /trunk/test/main_graph1.c
Added JaccardIndex and CommonNeighbors to graph.*.
Modified check program to test these functions.
------------------------------------------------------------------------
r157 | rguimera | 2009-01-30 01:00:35 +0100 (Fri, 30 Jan 2009) | 3 lines
Changed paths:
M /trunk/README
M /trunk/configure.in
Added check for libgslcblas to configure.in. Not it works in Barcelona!!!!
Typo fixed in README.
------------------------------------------------------------------------
r156 | rguimera | 2009-01-30 00:21:44 +0100 (Fri, 30 Jan 2009) | 3 lines
Changed paths:
M /trunk/configure.in
D /trunk/ltmain.sh
New configure.in.
Removed autogenerated file ltmain.sh.
------------------------------------------------------------------------
r155 | rguimera | 2009-01-29 01:40:49 +0100 (Thu, 29 Jan 2009) | 1 line
Changed paths:
M /trunk/configure.in
More configure.in.
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r154 | rguimera | 2009-01-29 01:09:11 +0100 (Thu, 29 Jan 2009) | 1 line
Changed paths:
M /trunk/configure.in
More configure.in twicking.
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r153 | rguimera | 2009-01-29 01:01:38 +0100 (Thu, 29 Jan 2009) | 2 lines
Changed paths:
M /trunk/configure.in
Trying new configure.in.
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r152 | rguimera | 2009-01-29 00:50:55 +0100 (Thu, 29 Jan 2009) | 2 lines
Changed paths:
M /trunk/configure.in
Refined configure.in that checks for a few more things.
------------------------------------------------------------------------
r151 | rguimera | 2009-01-28 21:39:35 +0100 (Wed, 28 Jan 2009) | 3 lines
Changed paths:
M /trunk/src/graph.c
Small change to RandomizeSymmetric so that it has a smaller chance of
getting stucked with small networks.
------------------------------------------------------------------------
r150 | rguimera | 2009-01-28 18:52:40 +0100 (Wed, 28 Jan 2009) | 2 lines
Changed paths:
M /trunk/configure.in
M /trunk/utils/main_missing.c
Changes so that the GSL library is checked and used properly. utils/main_missing.c now compiles correctly.
------------------------------------------------------------------------
r149 | rguimera | 2009-01-28 02:03:00 +0100 (Wed, 28 Jan 2009) | 3 lines
Changed paths:
M /trunk/src/missing.c
Important "bug" corrected in MissingLinks. At the beginning, node groups are now reset---otherwise, there are problems when working with a network whose nodes have been previously assigned to groups. This has not been an issue before, but it has become important with the new SBMStructureScore function.
------------------------------------------------------------------------
r148 | rguimera | 2009-01-27 23:23:59 +0100 (Tue, 27 Jan 2009) | 1 line
Changed paths:
M /trunk/src/tools.c
Back to the old form of stddev (dividing by N).
------------------------------------------------------------------------
r147 | rguimera | 2009-01-27 23:21:29 +0100 (Tue, 27 Jan 2009) | 1 line
Changed paths:
M /trunk/src/tools.c
Fixed bug in stddev, created in the previous commit.
------------------------------------------------------------------------
r146 | rguimera | 2009-01-27 22:19:20 +0100 (Tue, 27 Jan 2009) | 2 lines
Changed paths:
M /trunk/src/missing.c
M /trunk/src/missing.h
Added SBMStructureScore.
------------------------------------------------------------------------
r145 | rguimera | 2009-01-27 22:04:43 +0100 (Tue, 27 Jan 2009) | 2 lines
Changed paths:
M /trunk/src/tools.c
stddev now divided by N-1, instead of N.
------------------------------------------------------------------------
r144 | rguimera | 2009-01-27 21:26:13 +0100 (Tue, 27 Jan 2009) | 3 lines
Changed paths:
M /trunk/src/models.c
M /trunk/src/models.h
Added EmptyGraph function.
------------------------------------------------------------------------
r143 | rguimera | 2009-01-27 19:34:33 +0100 (Tue, 27 Jan 2009) | 2 lines
Changed paths:
M /trunk/src/missing.c
M /trunk/src/missing.h
NetworkReliability renamed to SBMError.
------------------------------------------------------------------------
r142 | rguimera | 2008-11-22 23:52:53 +0100 (Sat, 22 Nov 2008) | 2 lines
Changed paths:
M /trunk/src/graph.c
Fixed bug in AddRandomLinks.
------------------------------------------------------------------------
r141 | rguimera | 2008-11-22 03:00:45 +0100 (Sat, 22 Nov 2008) | 2 lines
Changed paths:
M /trunk/src/graph.c
M /trunk/src/missing.c
Fixed some minor bugs and memory leaks.
------------------------------------------------------------------------
r140 | rguimera | 2008-11-22 02:02:45 +0100 (Sat, 22 Nov 2008) | 3 lines
Changed paths:
M /trunk/src/graph.c
M /trunk/src/graph.h
Modified RemoveRandomLinks so that the second argument is now the number of links to be removed (rather
than the probability of removing each of the links in the network).
------------------------------------------------------------------------
r139 | rguimera | 2008-11-20 21:11:43 +0100 (Thu, 20 Nov 2008) | 2 lines
Changed paths:
M /trunk/src/graph.c
M /trunk/src/graph.h
Added AddRandomLinks function.
------------------------------------------------------------------------
r138 | rguimera | 2008-11-18 01:54:08 +0100 (Tue, 18 Nov 2008) | 2 lines
Changed paths:
M /trunk/src/missing.c
Small bug fixed in NetworkReliability.
------------------------------------------------------------------------
r137 | rguimera | 2008-11-18 01:52:47 +0100 (Tue, 18 Nov 2008) | 2 lines
Changed paths:
M /trunk/src/missing.c
M /trunk/src/missing.h
First version of the network reliability score.
------------------------------------------------------------------------
r136 | rguimera | 2008-10-23 22:01:26 +0200 (Thu, 23 Oct 2008) | 3 lines
Changed paths:
M /trunk/src/Makefile.am
A /trunk/src/missing.c
A /trunk/src/missing.h
M /trunk/src/modules.c
M /trunk/src/modules.h
M /trunk/utils/main_missing.c
Missing link functions moved out of modules.
main_missing.c in utils modified accordingly.
------------------------------------------------------------------------
r134 | rguimera | 2008-10-23 00:39:18 +0200 (Thu, 23 Oct 2008) | 3 lines
Changed paths:
M /trunk/src/modules.c
M /trunk/src/modules.h
Cleaned up version of the "missing links" subroutines. Monte Carlo steps are now done in a separate subroutine.
------------------------------------------------------------------------
r133 | rguimera | 2008-10-17 19:01:33 +0200 (Fri, 17 Oct 2008) | 2 lines
Changed paths:
A /trunk/utils/main_missing.c
Forgot to add this util before.
------------------------------------------------------------------------
r132 | rguimera | 2008-10-16 02:08:31 +0200 (Thu, 16 Oct 2008) | 2 lines
Changed paths:
M /trunk/src/modules.c
M /trunk/src/tools.c
M /trunk/src/tools.h
Much faster version of MissingLinks.
------------------------------------------------------------------------
r131 | rguimera | 2008-10-15 23:54:54 +0200 (Wed, 15 Oct 2008) | 3 lines
Changed paths:
M /trunk/src/modules.c
M /trunk/src/tools.c
M /trunk/src/tools.h
Faster missing links through a bunch of changes, including faster LogChoose (formerly LogBinomialCoef).
------------------------------------------------------------------------
r130 | rguimera | 2008-10-14 02:13:23 +0200 (Tue, 14 Oct 2008) | 2 lines
Changed paths:
M /trunk/src/modules.c
M /trunk/src/modules.h
Added initial missing links subroutines.
------------------------------------------------------------------------
r129 | rguimera | 2008-10-07 23:15:28 +0200 (Tue, 07 Oct 2008) | 2 lines
Changed paths:
M /trunk/src/graph.c
M /trunk/src/graph.h
M /trunk/src/modules.c
M /trunk/src/modules.h
M /trunk/src/tools.c
M /trunk/src/tools.h
M /trunk/utils/Makefile.am
M /trunk/utils/main_betweenness.c
Initial work on missing links.
------------------------------------------------------------------------
r128 | rguimera | 2008-09-25 19:32:14 +0200 (Thu, 25 Sep 2008) | 1 line
Changed paths:
M /trunk/src/graph.c
M /trunk/src/graph.h
Old changed (long forgotten) to graph.
------------------------------------------------------------------------
r127 | rguimera | 2008-04-18 19:34:32 +0200 (Fri, 18 Apr 2008) | 1 line
Changed paths:
M /trunk/src/bipartite.c
Changes to bipartite.c to make SACommunityIdentBipart less prone to rounding errors. Also, the no-change-counter is, now, only increase for low enough temperatures (that is, not at the very beginning).
------------------------------------------------------------------------
r126 | rguimera | 2008-03-26 00:37:58 +0100 (Wed, 26 Mar 2008) | 2 lines
Changed paths:
M /trunk/src/graph.c
M /trunk/src/graph.h
NodeBetweennessStatistics added (to calculate mean, std, min and max node betweenness in the network).
------------------------------------------------------------------------
r125 | rguimera | 2008-03-26 00:05:12 +0100 (Wed, 26 Mar 2008) | 1 line
Changed paths:
M /trunk/src/datastruct.c
M /trunk/src/datastruct.h
svn:keywords added to datastruct.*
------------------------------------------------------------------------
r124 | rguimera | 2008-03-26 00:02:36 +0100 (Wed, 26 Mar 2008) | 2 lines
Changed paths:
M /trunk/utils/Makefile.am
A /trunk/utils/main_betweenness.c
Betweenness calculation utility added.
------------------------------------------------------------------------
r123 | rguimera | 2008-03-25 23:19:06 +0100 (Tue, 25 Mar 2008) | 3 lines
Changed paths:
M /trunk/src/Makefile.am
A /trunk/src/datastruct.c
A /trunk/src/datastruct.h
M /trunk/src/graph.c
M /trunk/src/graph.h
M /trunk/test/Makefile.am
A /trunk/test/main_betweenness.c
A /trunk/test/test_betw.dat
Brandes betweenness algorithm added, along with a test program and data structure functions (queue and
stack). Makefile.am changed in test and src accordingly.
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r122 | rguimera | 2008-03-25 19:58:03 +0100 (Tue, 25 Mar 2008) | 1 line
Changed paths:
D /trunk/test/testpart.dat
This file is not needed for the tests.
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r121 | rguimera | 2008-03-25 19:46:10 +0100 (Tue, 25 Mar 2008) | 3 lines
Changed paths:
M /trunk/test/Makefile.am
Test networks added to the distribution through Makefile.am, so that all tests can pass from the
distribution alone.
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r120 | rguimera | 2008-02-06 20:17:03 +0100 (Wed, 06 Feb 2008) | 2 lines
Changed paths:
M /trunk/src/graph.c
CompareTwoNetworks thoroughly tested.
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r119 | rguimera | 2008-02-05 00:14:12 +0100 (Tue, 05 Feb 2008) | 2 lines
Changed paths:
M /trunk/README
Changes to README.
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r118 | rguimera | 2008-02-04 23:52:23 +0100 (Mon, 04 Feb 2008) | 1 line
Changed paths:
M /trunk/utils/main_netcompare.c
Random number generator is not needed here
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r117 | rguimera | 2008-02-04 23:49:31 +0100 (Mon, 04 Feb 2008) | 3 lines
Changed paths:
M /trunk/utils/Makefile.am
M /trunk/utils/main_netcompare.c
Keyword substitution added to these files.
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r116 | rguimera | 2008-02-04 23:27:48 +0100 (Mon, 04 Feb 2008) | 3 lines
Changed paths:
M /trunk/src/graph.c
Memory leak corrected in src/graph.c/CompareTwoNetworks.
------------------------------------------------------------------------
r115 | rguimera | 2008-02-04 23:15:17 +0100 (Mon, 04 Feb 2008) | 5 lines
Changed paths:
M /trunk/Makefile.am
M /trunk/configure.in
M /trunk/src/graph.c
M /trunk/src/graph.h
A /trunk/utils
A /trunk/utils/Makefile.am
A /trunk/utils/main_netcompare.c
Added a directory for network utility programs (compare two networks, layout a network, print a degree distribution, and so on).
Added the first utility, to compare two networks.
CompareTwoNetworks function added to graph.*
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r114 | rguimera | 2008-02-04 20:51:57 +0100 (Mon, 04 Feb 2008) | 1 line
Changed paths:
M /trunk/netcarto/main_netcarto.c
M /trunk/netcarto/main_netcarto_cl.c
netcarto and netcarto_cl in s mode (backup + minimal output).
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r113 | rguimera | 2008-02-04 19:10:18 +0100 (Mon, 04 Feb 2008) | 3 lines
Changed paths:
M /trunk/netcarto/main_netcarto.c
M /trunk/netcarto/main_netcarto_cl.c
netcarto and netcarto_cl are now in "backup" mode (that is, they write the best partition periodically while running).
------------------------------------------------------------------------
r112 | rguimera | 2008-01-24 01:32:14 +0100 (Thu, 24 Jan 2008) | 1 line
Changed paths:
M /trunk/netcarto/main_netcarto_cl.c