From 9561ece6cf59500becc8903e80a3837aaa709acc Mon Sep 17 00:00:00 2001 From: rrbrown98 <90479330+rrbrown98@users.noreply.github.com> Date: Mon, 11 Sep 2023 15:06:39 -0700 Subject: [PATCH] Update 04_mysterySampleID.md --- 2023_edition/04_mysterySampleID.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/2023_edition/04_mysterySampleID.md b/2023_edition/04_mysterySampleID.md index 25d1b35..04c3191 100644 --- a/2023_edition/04_mysterySampleID.md +++ b/2023_edition/04_mysterySampleID.md @@ -34,8 +34,8 @@ cat $me/data/samples/sampleX.fastq | awk '(NR%4==2){print length($0)}' | sort | less sampleX_readlength.hist.txt ``` - ## Using Nanostat + We used FastQC earlier to get some qc metrics, but we're now working with long read data, and thus we'll only use NanoStat for metrics. ``` NanoStat --fastq $me/data/samples/sampleX.fastq -n sampleX_nanostat.summary