From 8fe95ddd8fba68f6b32c1caa539368f86798a6df Mon Sep 17 00:00:00 2001 From: Daniel Date: Tue, 7 May 2024 15:28:10 +0200 Subject: [PATCH] workflows --- .github/workflows/R-check.yaml | 136 +++++++++++++++------------------ .github/workflows/pkgdown.yml | 51 ++----------- 2 files changed, 68 insertions(+), 119 deletions(-) diff --git a/.github/workflows/R-check.yaml b/.github/workflows/R-check.yaml index 0f6a55c0..525b1b31 100644 --- a/.github/workflows/R-check.yaml +++ b/.github/workflows/R-check.yaml @@ -1,101 +1,87 @@ +# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples +# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help + on: - push: - branches: - - master pull_request: branches: - master -name: R-check +name: R-CMD-check + +concurrency: + group: ${{ github.workflow }}-${{ github.head_ref }} + cancel-in-progress: true jobs: R-CMD-check: runs-on: ${{ matrix.config.os }} - name: ${{ matrix.config.os }} (${{ matrix.config.r }}) + name: ${{ matrix.config.os }} (${{ matrix.config.r }}) ${{ matrix.config.locale }} strategy: fail-fast: false matrix: config: - - {os: macOS-latest, r: 'devel'} - - {os: macOS-latest, r: 'release'} - - {os: macOS-latest, r: 'oldrel'} - - {os: windows-latest, r: 'devel'} - - {os: windows-latest, r: 'release'} - - {os: windows-latest, r: 'oldrel'} - - {os: ubuntu-16.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"} - - {os: ubuntu-16.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"} - - {os: ubuntu-16.04, r: 'oldrel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"} - - {os: ubuntu-16.04, r: '3.5.0', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"} - - {os: ubuntu-16.04, r: '3.4.0', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"} + ##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + ## IMPORTANT ## + ## ## + ## Checks are deliberately not run on R-devel. ## + ## This is because they are already run in `R-CMD-check-strict` workflow. ## + ##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + - { os: macOS-latest, r: "release" } + + - { os: windows-latest, r: "devel" } + - { os: windows-latest, r: "release" } + + - { os: ubuntu-latest, r: "devel" } + - { os: ubuntu-latest, r: "release" } env: - R_REMOTES_NO_ERRORS_FROM_WARNINGS: true - RSPM: ${{ matrix.config.rspm }} GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + R_KEEP_PKG_SOURCE: yes + _R_CHECK_CRAN_INCOMING_: false + _R_CHECK_FORCE_SUGGESTS_: false steps: - - uses: actions/checkout@v2 + # - name: Set locale + # if: matrix.config.locale == 'zh_CN.UTF-8' + # run: | + # sudo locale-gen zh_CN.UTF-8 + # echo "LC_ALL=zh_CN.UTF-8" >> $GITHUB_ENV + + - name: Set locale + if: matrix.config.locale == 'en_US' + run: | + sudo locale-gen en_US + echo "LC_ALL=en_US" >> $GITHUB_ENV + - uses: actions/checkout@v3 - - uses: r-lib/actions/setup-r@master + - uses: r-lib/actions/setup-pandoc@v2 with: - r-version: ${{ matrix.config.r }} + pandoc-version: "3.1" - - uses: r-lib/actions/setup-pandoc@master - - - name: Query dependencies - run: | - install.packages('remotes') - saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) - writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") - shell: Rscript {0} - - - name: Cache R packages - if: runner.os != 'Windows' - uses: actions/cache@v1 + - uses: r-lib/actions/setup-r@v2 with: - path: ${{ env.R_LIBS_USER }} - key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} - restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- - - - name: Install system dependencies - if: runner.os == 'Linux' - env: - RHUB_PLATFORM: linux-x86_64-ubuntu-gcc - run: | - Rscript -e "remotes::install_github('r-hub/sysreqs')" - sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") - sudo -s eval "$sysreqs" - - - name: Install dependencies - run: | - remotes::install_deps(dependencies = TRUE) - remotes::install_cran("rcmdcheck") - shell: Rscript {0} + r-version: ${{ matrix.config.r }} + http-user-agent: "release" + use-public-rspm: true - - name: Session info - run: | - options(width = 100) - pkgs <- installed.packages()[, "Package"] - sessioninfo::session_info(pkgs, include_base = TRUE) - shell: Rscript {0} - - - name: Check - env: - _R_CHECK_CRAN_INCOMING_: false - _R_CHECK_FORCE_SUGGESTS_: false - run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") - shell: Rscript {0} - - - name: Show testthat output - if: always() - run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true - shell: bash - - - name: Upload check results - if: failure() - uses: actions/upload-artifact@master + # TODO: Check which of the ignore conditions are still relevant given the + # current suggested dependencies and the minimum supported R version. + # Update if anything out of date or not needed anymore. + - uses: r-lib/actions/setup-r-dependencies@v2 + with: + pak-version: devel + extra-packages: | + any::rcmdcheck + any::BH + Matrix=?ignore-before-r=100.0.0 + needs: check + + # Don't error on "note" because if any of the suggested packages are not available + # for a given R version, this generates a NOTE causing unnecessary build failure + - uses: r-lib/actions/check-r-package@v2 with: - name: ${{ runner.os }}-r${{ matrix.config.r }}-results - path: check + error-on: '"warning"' + upload-snapshots: true diff --git a/.github/workflows/pkgdown.yml b/.github/workflows/pkgdown.yml index 7142d773..9d41975e 100644 --- a/.github/workflows/pkgdown.yml +++ b/.github/workflows/pkgdown.yml @@ -1,51 +1,14 @@ on: push: - branches: master + branches: [main, master] + pull_request: + branches: [main, master] + release: + types: [published] + workflow_dispatch: name: pkgdown jobs: pkgdown: - runs-on: macOS-latest - env: - GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} - steps: - - uses: actions/checkout@v2 - - - uses: r-lib/actions/setup-r@master - - - uses: r-lib/actions/setup-pandoc@master - - - uses: r-lib/actions/setup-tinytex@v1 - - - name: Query dependencies - run: | - install.packages('remotes') - saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) - writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") - shell: Rscript {0} - - - name: Cache R packages - uses: actions/cache@v1 - with: - path: ${{ env.R_LIBS_USER }} - key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} - restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- - - - name: Install dependencies - run: | - install.packages("remotes") - # To get links for homepage - remotes::install_cran("devtools") - remotes::install_deps(dependencies = TRUE) - remotes::install_dev("pkgdown") - shell: Rscript {0} - - - name: Install package - run: R CMD INSTALL . - - - name: Deploy package - run: | - git config --local user.email "actions@github.com" - git config --local user.name "GitHub Actions" - Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)' + uses: easystats/workflows/.github/workflows/pkgdown.yaml@main