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Check for valid amino acid sequences in the input #6

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guzmanfj opened this issue Jan 30, 2020 · 0 comments
Open

Check for valid amino acid sequences in the input #6

guzmanfj opened this issue Jan 30, 2020 · 0 comments
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enhancement New feature or request

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@guzmanfj
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I got this error when there was an X in a protein sequence

  File "/Users/guzmanfj/Documents/py/CoolerCodonOpt/scripts/codonopt.py", line 482, in opt_backtranslate
    codons = codons_probabilities[aa][0]
KeyError: 'X'

Input sequence:

>118
MFVEVPPENAIXTYYATSVLIIQIQDFYTPLNPANMLTLQQVIREPRDIRLTPRLDVQAQ
PKVWPS
@guzmanfj guzmanfj added the enhancement New feature or request label Jan 30, 2020
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@guzmanfj