notes

--
Sun Apr 27 08:44:34 BST 2003

	monomer bond, angles, torsion seem to work
	link bonds and angles seem to work.

	we need add_link_torsion, 
	        add_link_plane.



---
Thu May  1 16:11:51 BST 2003

	0.6.0
	monomer planes work now (I think).
	
---
Fri May  9 14:46:53 BST 2003

	0.6.6

	Am adding the fixed atoms.  So far have done bonds.

----
Fri May  9 20:33:27 BST 2003

	0.7.0

	Added fixed atoms for bonds, angles, planes and torsions

	(torsions not tested).

	
-------------------
Fri Oct 11 12:49:13 BST 2013


	       // 	       plane_distortion_info_t plane_1_info =
	       // distortion_score_plane_internal_using_atom_indices(plane_1_atom_indices, v);


      void add_parallel_plane_restraint(const std::vector<int> &plane_1_atom_indices,
					const std::vector<int> &plane_2_atom_indices,
					const double &target_angle_in,
					conost double &sigma) {

	 simple_restraint sr(PARALLEL_PLANE_RESTRAINT,
			     plane_1_atom_indices,
			     plane_2_atom_indices,
			     target_angle_in, sigma);
	 restraints_vec.push_back(sr);

      }