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Final rule exiting with error code #4

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Ulthran opened this issue Feb 10, 2025 · 0 comments · May be fixed by #6
Open

Final rule exiting with error code #4

Ulthran opened this issue Feb 10, 2025 · 0 comments · May be fixed by #6
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Ulthran commented Feb 10, 2025 •
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Describe the bug
The workflow is completing and producing the correct outputs but then exiting with an error somewhere at the end

Likely a result of samples that don't have enough reads passing through the pipeline (DNA free controls) not creating trees. Threshold should be ~100 reads minimum.
@Ulthran Ulthran added the bug Something isn't working label Feb 10, 2025
@Ulthran Ulthran self-assigned this Feb 10, 2025
@Ulthran Ulthran linked a pull request Feb 24, 2025 that will close this issue
Switch to better tree of life #6
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Switch to better tree of life sunbeam-labs/sbx_shotgun_unifrac
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