diff --git a/application/pom.xml b/application/pom.xml
deleted file mode 100644
index c1a0b952..00000000
--- a/application/pom.xml
+++ /dev/null
@@ -1,129 +0,0 @@
-
-
- 4.0.0
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../parent/pom.xml
-
-
- org.sybila.parasim.application
- parasim
- jar
-
- Parasim Application - tool for paralell simulations and verification
-
-
-
- org.mod4j.org.apache.commons
- cli
- 1.0.0
-
-
-
- org.sybila.parasim.model
- ode
- ${project.version}
-
-
- org.sybila.parasim.model
- space
- ${project.version}
-
-
- org.sybila.parasim.model
- trajectory
- ${project.version}
-
-
- org.sybila.parasim.model
- verification
- ${project.version}
-
-
-
- org.sybila.parasim.extension
- computation-simulation-impl
- ${project.version}
-
-
- org.sybila.parasim.extension
- computation-density-impl
- ${project.version}
-
-
- org.sybila.parasim.extension
- computation-verification-impl
- ${project.version}
-
-
- org.sybila.parasim.extension
- computation-lifecycle-impl
- ${project.version}
-
-
- org.sybila.parasim.extension
- visualisation-plot-impl
- ${project.version}
-
-
- org.sybila.parasim.extension
- computation-cycledetection-impl
- ${project.version}
-
-
- org.sybila.parasim.extension
- result-export-impl
- ${project.version}
-
-
- org.sybila.parasim.extension
- project-manager-simple
- ${project.version}
-
-
- org.sybila.parasim.extension
- progress-logger
- ${project.version}
-
-
-
-
-
- distribution
-
- true
-
-
-
-
- maven-assembly-plugin
- 2.3
-
-
-
- org.sybila.parasim.application.Main
-
-
-
- src/main/assembly/distribution.xml
-
-
-
-
- executeble-dist
- package
-
- single
-
-
-
-
-
-
-
-
-
-
\ No newline at end of file
diff --git a/build-all.sh b/build-all.sh
deleted file mode 100755
index a72d9bf3..00000000
--- a/build-all.sh
+++ /dev/null
@@ -1,5 +0,0 @@
-#!/bin/bash
-MAVEN_OPTS="-Xmx4096m -XX:MaxPermSize=2048m";
-SCRIPT_DIR=`dirname $BASH_SOURCE`;
-SCRIPT_DIR=`readlink -f $SCRIPT_DIR`;
-mvn $@ -Plicense,parent,util,core,model,extensions,application,resources -f $SCRIPT_DIR/pom.xml;
diff --git a/build.gradle b/build.gradle
index fb7ece08..680affd0 100644
--- a/build.gradle
+++ b/build.gradle
@@ -13,7 +13,7 @@ allprojects {
apply plugin: 'jacoco'
apply plugin: "com.github.hierynomus.license"
- version = '2.1.0-SNAPSHOT'
+ version = '2.2.0'
group = 'org.sybila.parasim'
repositories {
diff --git a/core/pom.xml b/core/pom.xml
deleted file mode 100644
index 8588a733..00000000
--- a/core/pom.xml
+++ /dev/null
@@ -1,71 +0,0 @@
-
-
- 4.0.0
-
- core
- jar
-
- Core Module
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../parent/pom.xml
-
-
-
-
- org.apache.commons
- commons-lang3
-
-
- net.jcip
- jcip-annotations
-
-
- javassist
- javassist
-
-
- org.slf4j
- slf4j-log4j12
-
-
- org.testng
- testng
-
-
-
-
-
-
- org.codehaus.mojo
- rmic-maven-plugin
- 1.1
-
-
- rmi compilation
-
- rmic
-
- compile
-
- ${project.build.outputDirectory}
-
-
-
-
- test-rmic
-
- test-compile
-
- ${project.build.testOutputDirectory}
-
-
-
-
-
-
-
-
diff --git a/extensions/computation-cycledetection-api/pom.xml b/extensions/computation-cycledetection-api/pom.xml
deleted file mode 100644
index 4646a71a..00000000
--- a/extensions/computation-cycledetection-api/pom.xml
+++ /dev/null
@@ -1,26 +0,0 @@
-
-
- 4.0.0
-
- org.sybila.parasim.extension
- computation-cycledetection-api
- jar
-
- computation-cycledetection-api
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../../parent/pom.xml
-
-
-
-
- org.sybila.parasim.model
- trajectory
- ${project.version}
-
-
-
-
\ No newline at end of file
diff --git a/extensions/computation-cycledetection-impl/pom.xml b/extensions/computation-cycledetection-impl/pom.xml
deleted file mode 100644
index a4c0be9d..00000000
--- a/extensions/computation-cycledetection-impl/pom.xml
+++ /dev/null
@@ -1,36 +0,0 @@
-
-
- 4.0.0
-
- org.sybila.parasim.extension
- computation-cycledetection-impl
- jar
-
- computation-cycledetection-impl
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../../parent/pom.xml
-
-
-
-
- org.sybila.parasim.extension
- computation-cycledetection-api
- ${project.version}
-
-
- org.sybila.parasim
- util
- ${project.version}
-
-
- org.sybila.parasim
- core
- ${project.version}
-
-
-
-
\ No newline at end of file
diff --git a/extensions/computation-density-api/pom.xml b/extensions/computation-density-api/pom.xml
deleted file mode 100644
index 162a92d2..00000000
--- a/extensions/computation-density-api/pom.xml
+++ /dev/null
@@ -1,35 +0,0 @@
-
- 4.0.0
-
- org.sybila.parasim.extension
- computation-density-api
- jar
-
- computation-density-api
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../../parent/pom.xml
-
-
-
-
- org.sybila.parasim.model
- trajectory
- ${project.version}
-
-
- org.sybila.parasim.model
- space
- ${project.version}
-
-
- org.sybila.parasim
- core
- ${project.version}
-
-
-
-
diff --git a/extensions/computation-density-impl/pom.xml b/extensions/computation-density-impl/pom.xml
deleted file mode 100644
index f86363fd..00000000
--- a/extensions/computation-density-impl/pom.xml
+++ /dev/null
@@ -1,43 +0,0 @@
-
- 4.0.0
-
- org.sybila.parasim.extension
- computation-density-impl
- jar
-
- computation-density-impl
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../../parent/pom.xml
-
-
-
-
- org.sybila.parasim.extension
- computation-lifecycle-api
- ${project.version}
-
-
- org.sybila.parasim.extension
- computation-density-api
- ${project.version}
-
-
- org.sybila.parasim
- core
- ${project.version}
-
-
-
-
- org.sybila.parasim.extension
- computation-lifecycle-impl
- ${project.version}
- test
-
-
-
-
diff --git a/extensions/computation-lifecycle-api/pom.xml b/extensions/computation-lifecycle-api/pom.xml
deleted file mode 100644
index 67c0e43c..00000000
--- a/extensions/computation-lifecycle-api/pom.xml
+++ /dev/null
@@ -1,31 +0,0 @@
-
-
- 4.0.0
-
- org.sybila.parasim.extension
- computation-lifecycle-api
- jar
-
- computation-lifecycle-api
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../../parent/pom.xml
-
-
-
-
- org.sybila.parasim.model
- core
- ${project.version}
-
-
- org.sybila.parasim
- core
- ${project.version}
-
-
-
-
diff --git a/extensions/computation-lifecycle-impl/pom.xml b/extensions/computation-lifecycle-impl/pom.xml
deleted file mode 100644
index 74cce979..00000000
--- a/extensions/computation-lifecycle-impl/pom.xml
+++ /dev/null
@@ -1,56 +0,0 @@
-
- 4.0.0
-
- org.sybila.parasim.extension
- computation-lifecycle-impl
- jar
-
- computation-lifecycle-impl
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../../parent/pom.xml
-
-
-
-
- org.sybila.parasim.extension
- computation-lifecycle-api
- ${project.version}
-
-
-
-
-
-
- org.codehaus.mojo
- rmic-maven-plugin
- 1.1
-
-
- rmi compilation
-
- rmic
-
- compile
-
- ${project.build.outputDirectory}
-
-
-
-
- test-rmic
-
- test-compile
-
- ${project.build.testOutputDirectory}
-
-
-
-
-
-
-
-
diff --git a/extensions/computation-simulation-api/pom.xml b/extensions/computation-simulation-api/pom.xml
deleted file mode 100644
index ddd69d5b..00000000
--- a/extensions/computation-simulation-api/pom.xml
+++ /dev/null
@@ -1,51 +0,0 @@
-
-
- 4.0.0
-
- org.sybila.parasim.extension
- computation-simulation-api
- jar
-
- computation-simulation-api
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../../parent/pom.xml
-
-
-
-
- org.sybila.parasim.model
- ode
- ${project.version}
-
-
- org.sybila.parasim.model
- trajectory
- ${project.version}
-
-
- org.sybila.parasim.model
- space
- ${project.version}
-
-
- org.sybila.parasim
- core
- ${project.version}
-
-
- dk.ange
- javaoctave
- ${version.dk.ange.javaoctave}
-
-
- commons-logging
- commons-logging
- ${version.commons.logging}
-
-
-
-
\ No newline at end of file
diff --git a/extensions/computation-simulation-impl/pom.xml b/extensions/computation-simulation-impl/pom.xml
deleted file mode 100644
index ff510b42..00000000
--- a/extensions/computation-simulation-impl/pom.xml
+++ /dev/null
@@ -1,41 +0,0 @@
-
-
- 4.0.0
-
- org.sybila.parasim.extension
- computation-simulation-impl
- jar
-
- computation-simulation-impl
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../../parent/pom.xml
-
-
-
-
- org.sybila.parasim.extension
- computation-simulation-api
- ${project.version}
-
-
- org.sybila.parasim
- core
- ${project.version}
-
-
- org.sybila.parasim.extension
- computation-lifecycle-api
- ${project.version}
-
-
- org.sybila.parasim.extension
- computation-lifecycle-api
- ${project.version}
-
-
-
-
\ No newline at end of file
diff --git a/extensions/computation-verification-api/pom.xml b/extensions/computation-verification-api/pom.xml
deleted file mode 100644
index f6a2cd3b..00000000
--- a/extensions/computation-verification-api/pom.xml
+++ /dev/null
@@ -1,40 +0,0 @@
-
- 4.0.0
-
- org.sybila.parasim.extension
- computation-verification-api
- jar
-
- computation-verification-api
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../../parent/pom.xml
-
-
-
-
- org.sybila.parasim.model
- trajectory
- ${project.version}
-
-
- org.sybila.parasim.model
- verification
- ${project.version}
-
-
- org.sybila.parasim.extension
- computation-density-api
- ${project.version}
-
-
- org.sybila.parasim.extension
- computation-cycledetection-api
- ${project.version}
-
-
-
-
diff --git a/extensions/computation-verification-impl/pom.xml b/extensions/computation-verification-impl/pom.xml
deleted file mode 100644
index b205abc9..00000000
--- a/extensions/computation-verification-impl/pom.xml
+++ /dev/null
@@ -1,35 +0,0 @@
-
- 4.0.0
-
- org.sybila.parasim.extension
- computation-verification-impl
- jar
-
- computation-verification-impl
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../../parent/pom.xml
-
-
-
-
- org.sybila.parasim.extension
- computation-verification-api
- ${project.version}
-
-
- org.sybila.parasim
- core
- ${project.version}
-
-
- org.sybila.parasim
- util
- ${project.version}
-
-
-
-
diff --git a/extensions/progress-logger/pom.xml b/extensions/progress-logger/pom.xml
deleted file mode 100644
index 800ee4b3..00000000
--- a/extensions/progress-logger/pom.xml
+++ /dev/null
@@ -1,40 +0,0 @@
-
-
- 4.0.0
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../../parent/pom.xml
-
-
- org.sybila.parasim.extension
- progress-logger
- jar
-
- progress-logger
-
-
-
- org.sybila.parasim
- core
- ${project.version}
-
-
- org.sybila.parasim
- util
- ${project.version}
-
-
- org.sybila.parasim.model
- verification
- ${project.version}
-
-
- org.sybila.parasim
- resources
- ${project.version}
-
-
-
diff --git a/extensions/project-manager-api/pom.xml b/extensions/project-manager-api/pom.xml
deleted file mode 100644
index 14619bb7..00000000
--- a/extensions/project-manager-api/pom.xml
+++ /dev/null
@@ -1,55 +0,0 @@
-
-
- 4.0.0
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../../parent/pom.xml
-
-
- org.sybila.parasim.extension
- project-manager-api
- jar
-
- project-manager-api
-
-
-
- org.sybila.parasim
- core
- ${project.version}
-
-
- org.sybila.parasim
- resources
- ${project.version}
-
-
- org.sybila.parasim
- util
- ${project.version}
-
-
- org.sybila.parasim.model
- ode
- ${project.version}
-
-
- org.sybila.parasim.model
- space
- ${project.version}
-
-
- org.sybila.parasim.model
- verification
- ${project.version}
-
-
- org.sybila.parasim.extension
- computation-simulation-api
- ${project.version}
-
-
-
diff --git a/extensions/project-manager-simple/pom.xml b/extensions/project-manager-simple/pom.xml
deleted file mode 100644
index b4e0c067..00000000
--- a/extensions/project-manager-simple/pom.xml
+++ /dev/null
@@ -1,25 +0,0 @@
-
-
- 4.0.0
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../../parent/pom.xml
-
-
- org.sybila.parasim.extension
- project-manager-simple
- jar
-
- project-manager-simple
-
-
-
- org.sybila.parasim.extension
- project-manager-api
- ${project.version}
-
-
-
diff --git a/extensions/result-export-api/pom.xml b/extensions/result-export-api/pom.xml
deleted file mode 100644
index a9ed16c6..00000000
--- a/extensions/result-export-api/pom.xml
+++ /dev/null
@@ -1,30 +0,0 @@
-
-
- 4.0.0
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../../parent/pom.xml
-
-
- org.sybila.parasim.extension
- result-export-api
- jar
-
-
-
- org.sybila.parasim
- core
- ${project.version}
-
-
- org.sybila.parasim.model
- verification
- ${project.version}
-
-
-
-
-
diff --git a/extensions/result-export-impl/pom.xml b/extensions/result-export-impl/pom.xml
deleted file mode 100644
index 386fbd57..00000000
--- a/extensions/result-export-impl/pom.xml
+++ /dev/null
@@ -1,25 +0,0 @@
-
-
- 4.0.0
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../../parent/pom.xml
-
-
- org.sybila.parasim.extension
- result-export-impl
- jar
-
-
-
- org.sybila.parasim.extension
- result-export-api
- ${project.version}
-
-
-
-
-
diff --git a/extensions/visualisation-plot-api/pom.xml b/extensions/visualisation-plot-api/pom.xml
deleted file mode 100644
index 6c8e4b0a..00000000
--- a/extensions/visualisation-plot-api/pom.xml
+++ /dev/null
@@ -1,33 +0,0 @@
-
-
- 4.0.0
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../../parent/pom.xml
-
-
- org.sybila.parasim.extension
- visualisation-plot-api
- jar
-
- visualisation-plot-api
-
-
-
- org.sybila.parasim
- core
- ${project.version}
-
-
- org.sybila.parasim.model
- verification
- ${project.version}
-
-
-
-
-
-
diff --git a/extensions/visualisation-plot-impl/pom.xml b/extensions/visualisation-plot-impl/pom.xml
deleted file mode 100644
index e22dad9b..00000000
--- a/extensions/visualisation-plot-impl/pom.xml
+++ /dev/null
@@ -1,35 +0,0 @@
-
-
- 4.0.0
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../../parent/pom.xml
-
-
- org.sybila.parasim.extension
- visualisation-plot-impl
- jar
-
- visualisation-plot-impl
-
-
-
- org.sybila.parasim.extension
- visualisation-plot-api
- ${project.version}
-
-
- org.sybila.parasim
- core
- ${project.version}
-
-
- org.sybila.parasim
- util
- ${project.version}
-
-
-
diff --git a/model/model-core/pom.xml b/model/model-core/pom.xml
deleted file mode 100644
index 4c406665..00000000
--- a/model/model-core/pom.xml
+++ /dev/null
@@ -1,25 +0,0 @@
-
-
- 4.0.0
-
-
- parasim-parent
- org.sybila.parasim
- 2.1.0-SNAPSHOT
- ../../parent/pom.xml
-
-
- org.sybila.parasim.model
- core
- 2.1.0-SNAPSHOT
-
- Model Core Module
-
-
-
- org.slf4j
- slf4j-log4j12
-
-
-
-
diff --git a/model/ode/pom.xml b/model/ode/pom.xml
deleted file mode 100644
index f52f6099..00000000
--- a/model/ode/pom.xml
+++ /dev/null
@@ -1,42 +0,0 @@
-
-
- 4.0.0
-
- org.sybila.parasim.model
- ode
- jar
-
- ode
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../../parent/pom.xml
-
-
-
-
- org.sybila.parasim.model
- trajectory
- ${project.version}
-
-
- dk.ange
- javaoctave
- ${version.dk.ange.javaoctave}
-
-
- commons-logging
- commons-logging
- ${version.commons.logging}
-
-
- org.sbml
- jsbml
- 0.8
- with-dependencies-without-log4j
-
-
-
-
diff --git a/model/space/pom.xml b/model/space/pom.xml
deleted file mode 100644
index ee84f22d..00000000
--- a/model/space/pom.xml
+++ /dev/null
@@ -1,36 +0,0 @@
-
-
- 4.0.0
-
- org.sybila.parasim.model
- space
- jar
-
- space
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../../parent/pom.xml
-
-
-
-
- org.sybila.parasim.model
- core
- ${project.version}
-
-
- org.sybila.parasim.model
- trajectory
- ${project.version}
-
-
- org.sybila.parasim.model
- ode
- ${project.version}
-
-
-
-
diff --git a/model/trajectory/pom.xml b/model/trajectory/pom.xml
deleted file mode 100644
index 6a8c233f..00000000
--- a/model/trajectory/pom.xml
+++ /dev/null
@@ -1,26 +0,0 @@
-
-
- 4.0.0
-
- org.sybila.parasim.model
- trajectory
- jar
-
- trajectory
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../../parent/pom.xml
-
-
-
-
- org.sybila.parasim.model
- core
- ${project.version}
-
-
-
-
diff --git a/model/verification/pom.xml b/model/verification/pom.xml
deleted file mode 100644
index 7e844361..00000000
--- a/model/verification/pom.xml
+++ /dev/null
@@ -1,41 +0,0 @@
-
-
- 4.0.0
-
- org.sybila.parasim.model
- verification
- jar
-
- verification
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../../parent/pom.xml
-
-
-
-
- org.sybila.parasim
- util
- ${project.version}
-
-
- org.sybila.parasim.model
- ode
- ${project.version}
-
-
- org.sybila.parasim.model
- core
- ${project.version}
-
-
- org.sybila.parasim.model
- space
- ${project.version}
-
-
-
-
diff --git a/parasim.sh b/parasim.sh
deleted file mode 100755
index 1e66e4d0..00000000
--- a/parasim.sh
+++ /dev/null
@@ -1,13 +0,0 @@
-#!/bin/sh
-JAVA_BIN=java
-JAVA_OPT="-Xmx4096m -XX:MaxPermSize=2048m"
-SELF=`readlink -f $0`
-SELF_DIR=`dirname $SELF`
-PARASIM_VERSION=`grep "" "$SELF_DIR/pom.xml" | head -n 1 | tr -d ' ' | sed 's///g' | sed 's/<\/version>//g'`
-TARGET_DIST=$SELF_DIR/application/target/parasim-${PARASIM_VERSION}-dist.jar
-if [ -f $TARGET_DIST ]; then
- $JAVA_BIN $JAVA_OPT -jar $TARGET_DIST "$@"
-else
- echo "Parasim has not been built. Try \`build-all install'."
- exit 1
-fi
diff --git a/parent/pom.xml b/parent/pom.xml
deleted file mode 100644
index d0152794..00000000
--- a/parent/pom.xml
+++ /dev/null
@@ -1,233 +0,0 @@
-
-
- 4.0.0
-
-
- org.sybila
- sybila-parent
- 5
-
-
-
- 2
- 1.9.0
- 1.0.1
- 0.6.4
- 1.1.1
- 2011 - 2013
- Sybila, Systems Biology Laboratory
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- pom
-
- parasim-parent
-
-
-
- scm:git:git://github.com/sybila/parasim.git
- scm:git:git@github.com:sybila/parasim.git
- https://github.com/sybila/parasim
- HEAD
-
-
-
-
- sybila-snapshots
- http://repository-sybila.forge.cloudbees.com/snapshot/
-
- false
-
-
- daily
- true
-
-
-
- sybila-releases
- http://repository-sybila.forge.cloudbees.com/release
-
- true
-
-
- false
-
-
-
- javaoctave
- https://kenai.com/svn/javaoctave~maven-repository/maven2/
-
- true
-
-
- false
-
-
-
-
-
-
-
- org.apache.commons
- commons-lang3
- 3.1
-
-
- org.slf4j
- slf4j-log4j12
- 1.7.2
-
-
- javassist
- javassist
- 3.12.1.GA
-
-
- net.jcip
- jcip-annotations
- 1.0
-
-
-
-
-
-
-
- maven-release-plugin
-
- -Dbuild.all=true, -DskipTests=true
-
-
-
-
-
-
-
- checkstyle
-
-
- !checkstyle.disabled
-
-
-
-
-
- org.apache.maven.plugins
- maven-dependency-plugin
-
-
- copy-checkstyle
- validate
-
- unpack
-
-
-
-
- org.sybila
- sybila-build-checkstyle
- ${version.sybila.checkstyle}
- jar
- false
- ${project.build.directory}
-
-
-
-
-
-
-
- org.apache.maven.plugins
- maven-checkstyle-plugin
-
-
- checkstyle
- process-sources
-
- check
-
-
-
-
- ${project.build.directory}/sybila-checkstyle/sybila-checkstyle.xml
- true
- error
- false
-
-
-
-
-
-
- generate-license
-
- true
-
-
-
-
- org.apache.maven.plugins
- maven-dependency-plugin
-
-
- copy-license
- validate
-
- unpack
-
-
-
-
- org.sybila.parasim
- parasim-license
- ${project.version}
- jar
- false
- ${project.build.directory}
-
-
-
-
-
-
-
- com.mycila.maven-license-plugin
- maven-license-plugin
- ${version.maven.license.plugin}
-
- ${basedir}
- ${project.build.directory}/license.txt
- false
- false
- true
- false
-
- src/**
-
-
- target/**
- .clover/**
-
- true
-
- ${license.year}
- ${license.name}
-
- UTF-8
-
-
-
- validate
-
- format
-
-
-
-
-
-
-
-
-
diff --git a/pom.xml b/pom.xml
deleted file mode 100644
index 29e13518..00000000
--- a/pom.xml
+++ /dev/null
@@ -1,137 +0,0 @@
-
-
- 4.0.0
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- parent/pom.xml
-
-
- parasim-module
- pom
-
- parasim-module
-
-
-
- extensions
-
-
- build.all
-
-
-
- extensions/computation-cycledetection-api
- extensions/computation-cycledetection-impl
- extensions/computation-density-api
- extensions/computation-density-impl
- extensions/computation-lifecycle-api
- extensions/computation-lifecycle-impl
- extensions/computation-simulation-api
- extensions/computation-simulation-impl
- extensions/computation-verification-api
- extensions/computation-verification-impl
- extensions/progress-logger
- extensions/project-manager-api
- extensions/project-manager-simple
- extensions/result-export-api
- extensions/result-export-impl
- extensions/visualisation-plot-api
- extensions/visualisation-plot-impl
-
-
-
- model
-
-
- build.all
-
-
-
- model/core
- model/ode
- model/space
- model/trajectory
- model/verification
-
-
-
- core
-
-
- build.all
-
-
-
- core
-
-
-
- license
-
-
- build.all
-
-
-
- license
-
-
-
- application
-
-
- build.all
-
-
-
- application
-
-
-
- util
-
-
- build.all
-
-
-
- util
-
-
-
- parent
-
-
- build.all
- true
-
-
-
- parent
-
-
-
- resources
-
-
- build.all
- true
-
-
-
- resources
-
-
-
-
-
-
- scm:git:git://github.com/sybila/parasim.git
- scm:git:git@github.com:sybila/parasim.git
- https://github.com/sybila/parasim
- HEAD
-
-
diff --git a/release.sh b/release.sh
deleted file mode 100755
index 4c3845bd..00000000
--- a/release.sh
+++ /dev/null
@@ -1,24 +0,0 @@
-#!/bin/bash
-MAVEN_OPTS="-Xmx4096m -XX:MaxPermSize=2048m";
-
-SCRIPT_DIR=`dirname $BASH_SOURCE`;
-SCRIPT_DIR=`readlink -f $SCRIPT_DIR`;
-
-read -p 'Enter release version: ' RELEASE;
-read -p 'Enter new development version: ' DEVELOPMENT;
-
-CONF="--batch-mode -Dtag=${RELEASE} -DreleaseVersion=${RELEASE} -DdevelopmentVersion=${DEVELOPMENT} -DignoreSnapshots=false -Dbuild.all=true -DskipTests=true";
-
-echo "Configuration: ${CONF}";
-echo "MAVEN_OPTS: ${MAVEN_OPTS}";
-
-read -p 'Press ENTER to clean...';
-mvn release:clean clean ${CONF};
-read -p 'Press ENTER to dry run...';
-mvn release:prepare -DdryRun=true ${CONF} || exit 1;
-read -p 'Press ENTER to clean...';
-mvn release:clean ${CONF};
-read -p 'Press ENTER to prepare...';
-mvn clean release:prepare ${CONF} || exit 1;
-read -p 'Press ENTER to perform...';
-mvn release:perform ${CONF} || exit 1;
diff --git a/resources/pom.xml b/resources/pom.xml
deleted file mode 100644
index 9d02eb0b..00000000
--- a/resources/pom.xml
+++ /dev/null
@@ -1,18 +0,0 @@
-
-
- 4.0.0
-
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../parent/pom.xml
-
-
- org.sybila.parasim
- resources
- jar
-
- Parasim Resources
-
-
diff --git a/util/pom.xml b/util/pom.xml
deleted file mode 100644
index 2363c93e..00000000
--- a/util/pom.xml
+++ /dev/null
@@ -1,19 +0,0 @@
-
-
- 4.0.0
-
- org.sybila.parasim
- parasim-parent
- 2.1.0-SNAPSHOT
- ../parent/pom.xml
-
- util
- Parasim Util Module
-
-
-
- org.apache.commons
- commons-lang3
-
-
-