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environment.yml
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environment.yml
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name: ts
channels:
- bioconda
- conda-forge
- pkgs/main
dependencies:
- appnope=0.1.3=pyhd8ed1ab_0
- arrow-cpp=10.0.1=h57ddcff_4_cpu
- asciitree=0.3.3=py_2
- asttokens=2.2.1=pyhd8ed1ab_0
- attrs=23.1.0=pyh71513ae_1
- aws-c-auth=0.6.21=h268417e_3
- aws-c-cal=0.5.20=h2f96456_3
- aws-c-common=0.8.5=hb7f2c08_0
- aws-c-compression=0.2.16=hfb1f584_0
- aws-c-event-stream=0.2.17=h38cbd52_1
- aws-c-http=0.7.0=h4f27208_0
- aws-c-io=0.13.12=hb3bb6ef_1
- aws-c-mqtt=0.7.13=h32e11d9_12
- aws-c-s3=0.2.1=h9eec77e_4
- aws-c-sdkutils=0.1.7=hfb1f584_0
- aws-checksums=0.1.14=hfb1f584_0
- aws-crt-cpp=0.18.16=ha874d0c_8
- aws-sdk-cpp=1.9.379=hdb1f066_7
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- bcftools=1.15.1=hd1821b6_0
- bokeh=3.1.1=pyhd8ed1ab_0
- brotli=1.0.9=hb7f2c08_8
- brotli-bin=1.0.9=hb7f2c08_8
- bzip2=1.0.8=hc929b4f_4
- c-ares=1.19.1=h0dc2134_0
- ca-certificates=2023.5.7=h8857fd0_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- certifi=2023.5.7=pyhd8ed1ab_0
- charset-normalizer=3.1.0=pyhd8ed1ab_0
- click=8.1.3=unix_pyhd8ed1ab_2
- cloudpickle=2.2.1=pyhd8ed1ab_0
- colorama=0.4.6=pyhd8ed1ab_0
- coloredlogs=15.0.1=pyhd8ed1ab_3
- comm=0.1.3=pyhd8ed1ab_0
- contourpy=1.0.7=py39h92daf61_0
- coreutils=9.3=hb7f2c08_0
- curl=7.87.0=haf73cf8_0
- cycler=0.11.0=pyhd8ed1ab_0
- cytoolz=0.12.0=py39ha30fb19_1
- cyvcf2=0.30.16=py39h1950d1c_1
- daiquiri=3.0.0=pyhd3deb0d_0
- dask=2023.5.0=pyhd8ed1ab_0
- dask-core=2023.5.0=pyhd8ed1ab_0
- debugpy=1.6.7=py39h7a8716b_0
- decorator=5.1.1=pyhd8ed1ab_0
- demes=0.2.3=pyhd8ed1ab_0
- distributed=2023.5.0=pyhd8ed1ab_0
- entrypoints=0.4=pyhd8ed1ab_0
- executing=1.2.0=pyhd8ed1ab_0
- expat=2.5.0=hf0c8a7f_1
- fasteners=0.17.3=pyhd8ed1ab_0
- fonttools=4.39.4=py39hdc70f33_0
- freetype=2.12.1=h3f81eb7_1
- fsspec=2023.5.0=pyh1a96a4e_0
- gdbm=1.18=h8a0c380_2
- gettext=0.21.1=h8a4c099_0
- gflags=2.2.2=hb1e8313_1004
- git=2.39.1=pl5321h00ebd2c_0
- glog=0.6.0=h8ac2a54_0
- gsl=2.7=h93259b0_0
- h5py=3.8.0=nompi_py39h03e16b4_101
- hdf5=1.14.0=nompi_h058c35b_103
- htslib=1.15.1=h567f53e_1
- humanfriendly=10.0=py39h6e9494a_4
- humanize=4.6.0=pyhd8ed1ab_0
- idna=3.4=pyhd8ed1ab_0
- importlib-metadata=6.6.0=pyha770c72_0
- importlib-resources=5.12.0=pyhd8ed1ab_0
- importlib_metadata=6.6.0=hd8ed1ab_0
- importlib_resources=5.12.0=pyhd8ed1ab_0
- ipykernel=6.23.1=pyh736e0ef_0
- ipython=8.13.2=pyhd1c38e8_0
- jedi=0.18.2=pyhd8ed1ab_0
- jinja2=3.1.2=pyhd8ed1ab_1
- joblib=1.2.0=pyhd8ed1ab_0
- jpeg=9e=hac89ed1_2
- jsonschema=4.17.3=pyhd8ed1ab_0
- jupyter_client=8.2.0=pyhd8ed1ab_0
- jupyter_core=5.3.0=py39h6e9494a_0
- kiwisolver=1.4.4=py39h92daf61_1
- krb5=1.20.1=h0165f36_0
- lcms2=2.14=h90f4b2a_0
- lerc=4.0.0=hb486fe8_0
- libabseil=20220623.0=cxx17_h844d122_6
- libaec=1.0.6=hf0c8a7f_1
- libarrow=10.0.1=hc216794_4_cpu
- libblas=3.9.0=16_osx64_openblas
- libbrotlicommon=1.0.9=hb7f2c08_8
- libbrotlidec=1.0.9=hb7f2c08_8
- libbrotlienc=1.0.9=hb7f2c08_8
- libcblas=3.9.0=16_osx64_openblas
- libcrc32c=1.1.2=he49afe7_0
- libcurl=7.87.0=haf73cf8_0
- libcxx=16.0.4=hd57cbcb_0
- libdeflate=1.13=h775f41a_0
- libedit=3.1.20191231=hed1e85f_2
- libev=4.33=haf1e3a3_1
- libevent=2.1.10=h815e4d9_4
- libexpat=2.5.0=hf0c8a7f_1
- libffi=3.4.2=h0d85af4_5
- libgfortran=5.0.0=12_2_0_h97931a8_31
- libgfortran5=12.2.0=he409387_31
- libgoogle-cloud=2.5.0=h32e9745_1
- libgrpc=1.51.1=h834a566_0
- libiconv=1.17=hac89ed1_0
- libjpeg-turbo=2.1.4=hb7f2c08_0
- liblapack=3.9.0=16_osx64_openblas
- libnghttp2=1.51.0=h0dd9d14_0
- libopenblas=0.3.21=openmp_h429af6e_3
- libpng=1.6.39=ha978bb4_0
- libprotobuf=3.21.12=hbc0c0cd_0
- libsodium=1.0.18=hbcb3906_1
- libsqlite=3.42.0=h58db7d2_0
- libssh2=1.10.0=h7535e13_3
- libthrift=0.16.0=h08c06f4_2
- libtiff=4.4.0=h5e0c7b4_3
- libutf8proc=2.8.0=hb7f2c08_0
- libwebp-base=1.3.0=hb7f2c08_0
- libxcb=1.15=hb7f2c08_0
- libzlib=1.2.13=hfd90126_4
- llvm-openmp=16.0.4=hff08bdf_0
- locket=1.0.0=pyhd8ed1ab_0
- lz4=4.3.2=py39hd0af75a_0
- lz4-c=1.9.4=hf0c8a7f_0
- markupsafe=2.1.2=py39ha30fb19_0
- matplotlib=3.7.1=py39h6e9494a_0
- matplotlib-base=3.7.1=py39hb2f573b_0
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- msgpack-python=1.0.5=py39h92daf61_0
- msprime=1.2.0=py39hb005308_2
- munkres=1.1.4=pyh9f0ad1d_0
- ncurses=6.3=h96cf925_1
- nest-asyncio=1.5.6=pyhd8ed1ab_0
- networkx=3.1=pyhd8ed1ab_0
- nextflow=23.04.1=h2a3209d_3
- numcodecs=0.11.0=py39h7a8716b_1
- numexpr=2.8.4=py39h75c1baf_0
- numpy=1.24.3=py39h892e69a_0
- olefile=0.46=pyh9f0ad1d_1
- openjdk=20.0.0=h7d26f99_0
- openjpeg=2.5.0=h5d0d7b0_1
- openssl=1.1.1t=hfd90126_0
- orc=1.8.2=ha9d861c_2
- packaging=23.1=pyhd8ed1ab_0
- pandas=2.0.1=py39h11b3245_1
- parquet-cpp=1.5.1=2
- parso=0.8.3=pyhd8ed1ab_0
- partd=1.4.0=pyhd8ed1ab_0
- patsy=0.5.3=pyhd8ed1ab_0
- pcre2=10.40=h1c4e4bc_0
- perl=5.32.1=2_h0d85af4_perl5
- pexpect=4.8.0=pyh1a96a4e_2
- pickleshare=0.7.5=py_1003
- pillow=8.3.1=py39ha4cf6ea_0
- pip=23.1.2=pyhd8ed1ab_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
- platformdirs=3.5.1=pyhd8ed1ab_0
- pomegranate=0.14.8=py39h6dc771e_0
- pooch=1.7.0=pyha770c72_3
- prompt-toolkit=3.0.38=pyha770c72_0
- prompt_toolkit=3.0.38=hd8ed1ab_0
- psutil=5.9.5=py39ha30fb19_0
- pthread-stubs=0.4=hc929b4f_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pure_eval=0.2.2=pyhd8ed1ab_0
- pyarrow=10.0.1=py39h31d4e7f_4_cpu
- pygments=2.15.1=pyhd8ed1ab_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pyrsistent=0.19.3=py39ha30fb19_0
- pysam=0.20.0=py39h8aa7adb_0
- pysocks=1.7.1=pyha2e5f31_6
- python=3.9.16=h218abb5_0
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-json-logger=2.0.7=pyhd8ed1ab_0
- python-lmdb=1.4.1=py39h7a8716b_0
- python-tzdata=2023.3=pyhd8ed1ab_0
- python_abi=3.9=2_cp39
- pytz=2023.3=pyhd8ed1ab_0
- pyyaml=6.0=py39ha30fb19_5
- pyzmq=25.0.2=py39hed8f129_0
- re2=2022.06.01=hb486fe8_1
- readline=8.2=h9e318b2_1
- requests=2.31.0=pyhd8ed1ab_0
- ruamel.yaml=0.17.26=py39hdc70f33_0
- ruamel.yaml.clib=0.2.7=py39ha30fb19_1
- scikit-allel=1.3.5=py39h4d6be9b_1
- scikit-learn=1.2.2=py39h151e6e4_1
- scipy=1.10.1=py39hded996c_3
- seaborn=0.12.2=hd8ed1ab_0
- seaborn-base=0.12.2=pyhd8ed1ab_0
- setuptools=67.7.2=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- snappy=1.1.10=h225ccf5_0
- sortedcontainers=2.4.0=pyhd8ed1ab_0
- sqlite=3.42.0=h2b0dec6_0
- stack_data=0.6.2=pyhd8ed1ab_0
- statsmodels=0.14.0=py39h57e1da4_1
- svgwrite=1.4.3=pyhd8ed1ab_0
- tblib=1.7.0=pyhd8ed1ab_0
- threadpoolctl=3.1.0=pyh8a188c0_0
- tk=8.6.12=h5dbffcc_0
- toolz=0.12.0=pyhd8ed1ab_0
- tornado=6.3.2=py39hdc70f33_0
- tqdm=4.65.0=pyhd8ed1ab_1
- traitlets=5.9.0=pyhd8ed1ab_0
- tsinfer=0.3.1=py39hfc8b457_0
- tskit=0.5.5=py39h57e1da4_0
- tszip=0.2.2=pyhd8ed1ab_0
- typing-extensions=4.6.0=hd8ed1ab_0
- typing_extensions=4.6.0=pyha770c72_0
- tzdata=2023c=h71feb2d_0
- unicodedata2=15.0.0=py39ha30fb19_0
- urllib3=2.0.2=pyhd8ed1ab_0
- wcwidth=0.2.6=pyhd8ed1ab_0
- wheel=0.40.0=pyhd8ed1ab_0
- xorg-libxau=1.0.11=h0dc2134_0
- xorg-libxdmcp=1.1.3=h35c211d_0
- xyzservices=2023.5.0=pyhd8ed1ab_1
- xz=5.2.10=h6c40b1e_1
- yaml=0.2.5=h0d85af4_2
- zarr=2.14.2=pyhd8ed1ab_0
- zeromq=4.3.4=he49afe7_1
- zict=3.0.0=pyhd8ed1ab_0
- zipp=3.15.0=pyhd8ed1ab_0
- zlib=1.2.13=hfd90126_4
- zstd=1.5.2=hbc0c0cd_6