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reference_motif.txt
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1000
chr10:127293562-127293909
BRUNOL4
CPEB4
CUG-BP
DAZAP1
ENOX1
FMR1
FXR2
G3BP2
HNRNPA1
HNRNPA1L2
HNRNPA2B1
HNRNPC
HNRNPH1
HNRNPH2
HuR
LIN28A
MATR3
MBNL1
MSI1
PABPN1
PTBP1
RBM28
RBM3
RBM5
SRSF1
SRSF10
SRSF2
SRSF3
SRSF5
SRSF7
SRSF9
TARDBP
TIA1
TRA2A
TRA2B
U2AF2
ZC3H14
chr11:49214073-49214804
BRUNOL4
BRUNOL5
CPEB2
CPEB4
CUG-BP
HNRNPC
HNRNPCL1
HNRNPH1
HuR
MBNL1
NOVA1
PCBP3
PTBP1
RALY
RBFOX1
RBM3
RBM41
RBM6
SRSF1
SRSF10
SRSF2
SRSF3
SRSF5
TARDBP
TIA1
TRA2B
U2AF2
ZC3H14
ZNF638
chr11:49854587-49855127
A1CF
BRUNOL4
BRUNOL5
BRUNOL6
CNOT4
CPEB2
CPEB4
CUG-BP
ENOX1
FMR1
G3BP2
HNRNPA1
HNRNPA1L2
HNRNPA2B1
HNRNPC
HNRNPCL1
HNRNPF
HNRNPH2
HNRNPL
HNRNPM
HNRNPU
HNRPLL
HuR
KHDRBS2
KHDRBS3
MATR3
MBNL1
NOVA1
PABPC1
PABPC4
PABPN1
PCBP2
PCBP3
PTBP1
QKI
RALY
RBM24
RBM38
RBM41
RBM46
SAMD4A
SART3
SFPQ
SRSF1
SRSF2
SRSF3
SRSF5
TARDBP
TIA1
TRA2B
U2AF2
YBX1
ZC3H14
ZCRB1
ZNF638
chr11:51267021-51267481
A1CF
BRUNOL4
BRUNOL5
BRUNOL6
CNOT4
CPEB4
CUG-BP
DAZAP1
ESRP2
FXR1
HNRNPA1
HNRNPA1L2
HNRNPA2B1
HNRNPH1
HNRNPL
HNRNPU
HNRPLL
HuR
IGF2BP2
IGF2BP3
KHDRBS1
KHDRBS2
KHDRBS3
LIN28A
MBNL1
MSI1
NOVA1
PABPC1
PABPC3
PABPC4
PABPC5
PABPN1
PCBP1
PCBP2
PCBP3
PTBP1
PUM2
QKI
RBM24
RBM38
RBM41
RBM42
RBMS1
RBMS3
SART3
SFPQ
SRSF1
SRSF10
SRSF2
SRSF3
SRSF5
SRSF7
SRSF9
TARDBP
TRA2B
U2AF2
YBX1
YBX2
ZC3H14
ZCRB1
chr11:80395642-80396025
A1CF
BRUNOL5
CPEB2
CPEB4
CUG-BP
DAZAP1
HNRNPA2B1
HNRNPC
HNRNPCL1
HNRNPK
HNRNPM
HuR
IGF2BP3
KHDRBS1
KHDRBS2
KHDRBS3
MATR3
MBNL1
MSI1
PABPC4
PABPC5
PCBP1
PCBP3
PTBP1
PUM2
QKI
RALY
RBFOX1
RBM24
RBM41
RBM42
RBM46
RBMS1
RBMS3
SNRNP70
SRSF1
SRSF2
SRSF3
SRSF5
TARDBP
TIA1
TRA2B
U2AF2
YBX1
ZC3H14
ZCRB1
ZNF638
chr1:182128534-182128902
A1CF
BRUNOL4
BRUNOL5
BRUNOL6
CPEB2
CPEB4
CUG-BP
DAZAP1
G3BP2
HNRNPA1
HNRNPA1L2
HNRNPA2B1
HNRNPC
HNRNPCL1
HNRNPF
HNRNPM
HNRNPU
HuR
KHDRBS3
MATR3
MBNL1
MSI1
PTBP1
PUM2
RALY
RBM24
RBM38
RBM41
RBM42
RBM6
RBMS1
RBMS3
SAMD4A
SNRNP70
SRSF1
SRSF2
SRSF3
SRSF5
TARDBP
TIA1
TRA2B
U2AF2
ZC3H14
ZCRB1
ZNF638
chr12:59146186-59146512
A1CF
BRUNOL4
CPEB2
CPEB4
CUG-BP
DAZAP1
ENOX1
ESRP2
HNRNPA1
HNRNPA1L2
HNRNPA2B1
HNRNPC
HNRNPCL1
HNRNPL
HNRNPM
HuR
IGF2BP2
IGF2BP3
KHDRBS1
KHDRBS2
KHDRBS3
MATR3
MBNL1
MSI1
PABPC1
PABPC3
PABPC4
PABPC5
PABPN1
PTBP1
PUM2
QKI
RALY
RBM41
RBM42
RBM46
RBMS1
RBMS3
SART3
SNRNP70
SRSF1
SRSF2
SRSF3
SRSF5
SRSF7
TIA1
TRA2B
U2AF2
YBX2
ZC3H14
ZCRB1
ZNF638
chr12:59146186-59146512
A1CF
BRUNOL4
CPEB2
CPEB4
CUG-BP
DAZAP1
ENOX1
ESRP2
HNRNPA1
HNRNPA1L2
HNRNPA2B1
HNRNPC
HNRNPCL1
HNRNPL
HNRNPM
HuR
IGF2BP2
IGF2BP3
KHDRBS1
KHDRBS2
KHDRBS3
MATR3
MBNL1
MSI1
PABPC1
PABPC3
PABPC4
PABPC5
PABPN1
PTBP1
PUM2
QKI
RALY
RBM41
RBM42
RBM46
RBMS1
RBMS3
SART3
SNRNP70
SRSF1
SRSF2
SRSF3
SRSF5
SRSF7
TIA1
TRA2B
U2AF2
YBX2
ZC3H14
ZCRB1
ZNF638
chr14:75845467-75845840
ESRP2
FUS
FXR2
HNRNPF
HNRNPH2
MBNL1
PPRC1
RBM4
RBM8A
SAMD4A
SRSF7
ZC3H10
chr15:100245082-100245495
BRUNOL4
BRUNOL5
CNOT4
CPEB2
CPEB4
DAZAP1
ENOX1
HNRNPA1
HNRNPA1L2
HNRNPA2B1
HNRNPC
HNRNPCL1
HNRNPH1
HNRNPH2
HNRNPL
HNRNPU
HNRPLL
HuR
KHDRBS1
KHDRBS2
KHDRBS3
LIN28A
MBNL1
MSI1
NOVA1
PABPC1
PABPC3
PABPC4
PABPC5
PABPN1
PCBP1
PCBP3
PTBP1
RALY
RBM24
RBM28
RBM38
RBM41
RBM46
RBM5
RBMS1
RBMS3
SART3
SFPQ
SRSF1
SRSF10
SRSF2
SRSF3
SRSF5
SRSF7
TARDBP
TIA1
TRA2A
TRA2B
TUT1
U2AF2
ZC3H14
ZCRB1
chr16:23108970-23109409
A1CF
BRUNOL4
BRUNOL5
BRUNOL6
CPEB2
CPEB4
CUG-BP
DAZAP1
ENOX1
FMR1
FXR1
G3BP2
HNRNPA1
HNRNPA2B1
HNRNPC
HNRNPCL1
HNRNPL
HNRNPU
HuR
KHDRBS1
KHDRBS2
KHDRBS3
LIN28A
MBNL1
PABPC1
PABPC3
PABPC4
PABPC5
PABPN1
PTBP1
PUM2
RALY
RBFOX1
RBM28
RBM3
RBM38
RBM41
RBM46
RBM6
RBMS1
RBMS3
SART3
SFPQ
SNRNP70
SNRPA
SRSF1
SRSF2
SRSF3
SRSF5
TARDBP
TIA1
TRA2B
U2AF2
YBX1
YBX2
ZC3H14
ZCRB1
chr16:91654461-91660730
A1CF
ANKHD1
BRUNOL4
BRUNOL5
BRUNOL6
CNOT4
CPEB2
CPEB4
CUG-BP
DAZAP1
ENOX1
ESRP2
FMR1
FUS
FXR1
FXR2
G3BP2
HNRNPA1
HNRNPA1L2
HNRNPA2B1
HNRNPC
HNRNPCL1
HNRNPF
HNRNPH1
HNRNPH2
HNRNPK
HNRNPL
HNRNPM
HNRNPU
HNRPLL
HuR
IGF2BP2
IGF2BP3
KHDRBS1
KHDRBS2
KHDRBS3
LIN28A
MATR3
MBNL1
MSI1
NOVA1
PABPC1
PABPC3
PABPC4
PABPC5
PABPN1
PCBP1
PCBP2
PCBP3
PTBP1
PUM2
QKI
RALY
RBFOX1
RBM24
RBM28
RBM3
RBM38
RBM41
RBM42
RBM45
RBM46
RBM5
RBM6
RBM8A
RBMS1
RBMS3
SAMD4A
SART3
SFPQ
SNRNP70
SNRPA
SRSF1
SRSF10
SRSF2
SRSF3
SRSF5
SRSF7
SRSF9
TARDBP
TIA1
TRA2A
TRA2B
TUT1
U2AF2
YBX1
YBX2
ZC3H10
ZC3H14
ZCRB1
ZNF638
chr17:31527160-31528551
ANKHD1
BRUNOL4
BRUNOL5
BRUNOL6
CNOT4
CPEB2
CPEB4
CUG-BP
DAZAP1
ENOX1
ESRP2
FMR1
FXR1
FXR2
G3BP2
HNRNPA1
HNRNPA2B1
HNRNPC
HNRNPCL1
HNRNPH1
HNRNPH2
HNRNPK
HNRNPL
HNRPLL
HuR
IGF2BP2
IGF2BP3
KHDRBS1
KHDRBS3
LIN28A
MATR3
MBNL1
MSI1
NOVA1
PABPC1
PABPC3
PABPC4
PABPC5
PABPN1
PCBP1
PCBP2
PCBP3
PTBP1
PUM2
RALY
RBM3
RBM38
RBM41
RBM42
RBM45
RBM5
RBM6
RBMS1
SART3
SNRNP70
SRSF1
SRSF10
SRSF2
SRSF3
SRSF5
SRSF7
SRSF9
TARDBP
TIA1
TRA2A
TRA2B
TUT1
U2AF2
YBX1
YBX2
ZC3H10
ZC3H14
ZNF638
chr17:6121678-6122494
BRUNOL4
BRUNOL5
BRUNOL6
CNOT4
CPEB2
CPEB4
CUG-BP
HNRNPC
HNRNPCL1
HNRNPK
HNRNPL
HNRNPU
HNRPLL
IGF2BP2
IGF2BP3
KHDRBS3
MBNL1
MSI1
PABPC1
PABPC4
PABPC5
PABPN1
PCBP3
PTBP1
PUM2
RALY
RBM24
RBM28
RBM38
RBM41
RBMS1
RBMS3
SART3
SRSF2
SRSF3
SRSF5
TARDBP
TIA1
TRA2B
U2AF2
YBX1
chr17:69287462-69287878
A1CF
ANKHD1
BRUNOL4
BRUNOL5
CNOT4
CUG-BP
ENOX1
ESRP2
FMR1
FXR1
FXR2
G3BP2
HNRNPA1
HNRNPA2B1
HNRNPF
HNRNPH1
HNRNPK
HNRNPL
HNRPLL
HuR
IGF2BP2
IGF2BP3
KHDRBS3
MATR3
MBNL1
MSI1
PABPC1
PABPN1
PCBP1
PCBP2
PCBP3
PTBP1
RBFOX1
RBM24
RBM28
RBM3
RBM38
RBM45
SAMD4A
SART3
SRSF1
SRSF10
SRSF2
SRSF3
SRSF5
SRSF7
SRSF9
TARDBP
TRA2A
TRA2B
ZNF638
chr2:120569133-120569532
A1CF
BRUNOL5
CPEB2
CPEB4
CUG-BP
DAZAP1
ESRP2
HNRNPA1
HNRNPA1L2
HNRNPA2B1
HNRNPC
HNRNPCL1
HNRNPF
HNRNPH2
HNRNPM
HuR
KHDRBS1
KHDRBS2
KHDRBS3
MATR3
MBNL1
MSI1
PABPC3
PABPC5
PABPN1
PCBP1
PTBP1
PUM2
QKI
RALY
RBM24
RBM28
RBM38
RBM41
RBM42
RBM46
RBM6
RBMS1
RBMS3
SFPQ
SRSF1
SRSF2
SRSF3
SRSF5
TARDBP
TIA1
TRA2B
TUT1
U2AF2
ZC3H14
ZCRB1
ZNF638
chr2:71853384-71853813
A1CF
BRUNOL6
CNOT4
CPEB2
CPEB4
G3BP2
HNRNPC
HNRNPCL1
HNRNPL
HNRPLL
KHDRBS2
KHDRBS3
MATR3
MBNL1
NOVA1
PABPC1
PABPC3
PABPC4
PABPC5
PABPN1
PTBP1
QKI
RALY
RBM3
RBM41
RBM42
RBM46
RBMS1
SART3
SFPQ
SRSF10
SRSF2
SRSF3
SRSF5
SRSF7
TARDBP
TIA1
TRA2B
TUT1
U2AF2
ZCRB1
ZNF638
chr3:34068011-34068402
A1CF
CUG-BP
HNRNPC
HNRNPCL1
HuR
MBNL1
PABPC5
PCBP1
RALY
RBMS1
SRSF3
SRSF5
TIA1
TRA2B
U2AF2
ZC3H14
ZNF638
chr3:60614533-60614886
A1CF
BRUNOL4
BRUNOL5
CPEB2
CPEB4
FXR1
HNRNPC
HNRNPCL1
HNRNPM
HNRNPU
HuR
KHDRBS2
KHDRBS3
MBNL1
PCBP1
PTBP1
PUM2
RALY
RBMS1
RBMS3
SNRPA
SRSF2
SRSF3
SRSF5
SRSF7
TIA1
TRA2B
TUT1
U2AF2
ZC3H14
ZCRB1
ZNF638
chr4:107027067-107027447
BRUNOL5
BRUNOL6
CPEB2
CPEB4
CUG-BP
FUS
FXR2
HNRNPC
HNRNPCL1
HNRNPH2
HNRNPK
HNRNPL
HNRPLL
HuR
KHDRBS3
MBNL1
NOVA1
PABPC3
PABPC4
PCBP2
PPRC1
PTBP1
RALY
RBM6
RBM8A
RBMS3
SAMD4A
SRSF1
SRSF2
SRSF3
SRSF5
SRSF7
TARDBP
TIA1
TRA2B
U2AF2
YBX1
ZC3H14
ZNF638
chr4:119111933-119112364
ANKHD1
BRUNOL4
BRUNOL5
BRUNOL6
CNOT4
CPEB2
CPEB4
CUG-BP
ENOX1
ESRP2
FMR1
FXR1
HNRNPA1L2
HNRNPC
HNRNPCL1
HNRNPF
HNRNPH1
HNRNPH2
HNRNPK
HNRNPL
HNRNPM
HNRNPU
HNRPLL
HuR
LIN28A
MATR3
MBNL1
NOVA1
PABPN1
PCBP1
PCBP3
PTBP1
RALY
RBM24
RBM28
RBM3
RBM38