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This was occurring because the denoising algorithm was ran on the entire agreement raster before it was clipped. This is a problem because there are some large features in the agreement raster if it isn't clipped and the spatial.distance.pdist() function calculates the distance between every pixel in each feature.
Fixed this issue by clipping the agreement raster before denoising.
@lmezei11 can you confirm that this solved the issue on your laptop?
Runs out of memory
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