pyproject.toml

[build-system]
requires = ["setuptools>=61.0"]
build-backend = "setuptools.build_meta"

[project]
name = "omdctk"
version = "1.1.0"
authors = [
  { name="Samuel Piquer Esteban", email="samuel.piquer@uv.es" },
]
description = "OMD Curation Toolkit"
readme = "README.md"
requires-python = ">=3.10"
classifiers = [
    "Programming Language :: Python :: 3",
    "License :: OSI Approved :: MIT License",
    "Operating System :: OS Independent",
    'Intended Audience :: Science/Research',
    'Topic :: Scientific/Engineering :: Bio-Informatics'
]
dependencies = [
    'aioftp', 'aiohttp', 'parfive',
    'termcolor', 'tabulate', 'tqdm',
    'mg-toolkit', 'pandas',
]


[project.urls]
"GitHub" = "https://github.com/tbcgit/omdctk"
"Documentation" = "https://github.com/tbcgit/omdctk/wiki"

[tool.setuptools]
include-package-data = true

[tool.setuptools.packages.find]
where = ['src']
namespaces = true

[tool.setuptools.package-data]
"omdctk.test_info" = ["*.log", "*.tsv","*.txt"]

[project.scripts]
check_fastqs                = 'omdctk.check_fastqs:main'
check_metadata_ENA          = 'omdctk.check_metadata_ENA:main'
download_fastqs             = 'omdctk.download_fastqs:main'
download_metadata_ENA       = 'omdctk.download_metadata_ENA:main'
filter_metadata             = 'omdctk.filter_metadata:main'
make_treatment_template     = 'omdctk.make_treatment_template:main'
merge_metadata              = 'omdctk.merge_metadata:main'
test_omdctk                 = 'omdctk.test_omdctk:main'
treat_fastqs                = 'omdctk.treat_fastqs:main'
treat_metadata              = 'omdctk.treat_metadata:main'
concat_datasets             = 'omdctk.concat_datasets:main'
check_metadata_values       = 'omdctk.check_metadata_values:main'