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<!DOCTYPE html>
<html lang="en"><head>
<script src="osupdates11012022_files/libs/clipboard/clipboard.min.js"></script>
<script src="osupdates11012022_files/libs/quarto-html/tabby.min.js"></script>
<script src="osupdates11012022_files/libs/quarto-html/popper.min.js"></script>
<script src="osupdates11012022_files/libs/quarto-html/tippy.umd.min.js"></script>
<link href="osupdates11012022_files/libs/quarto-html/tippy.css" rel="stylesheet">
<link href="osupdates11012022_files/libs/quarto-html/quarto-html.min.css" rel="stylesheet" data-mode="light">
<link href="osupdates11012022_files/libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles"><meta charset="utf-8">
<meta name="generator" content="quarto-1.0.37">
<meta name="author" content="Dr. Marcus Beck, mbeck@tbep.org">
<meta name="dcterms.date" content="2022-11-01">
<title>OPEN SCIENCE UPDATES</title>
<meta name="apple-mobile-web-app-capable" content="yes">
<meta name="apple-mobile-web-app-status-bar-style" content="black-translucent">
<meta name="viewport" content="width=device-width, initial-scale=1.0, maximum-scale=1.0, user-scalable=no, minimal-ui">
<link rel="stylesheet" href="osupdates11012022_files/libs/revealjs/dist/reset.css">
<link rel="stylesheet" href="osupdates11012022_files/libs/revealjs/dist/reveal.css">
<style>
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
span.underline{text-decoration: underline;}
div.column{display: inline-block; vertical-align: top; width: 50%;}
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
ul.task-list{list-style: none;}
</style>
<link rel="stylesheet" href="osupdates11012022_files/libs/revealjs/dist/theme/quarto.css" id="theme">
<link href="osupdates11012022_files/libs/revealjs/plugin/quarto-line-highlight/line-highlight.css" rel="stylesheet">
<link href="osupdates11012022_files/libs/revealjs/plugin/reveal-menu/menu.css" rel="stylesheet">
<link href="osupdates11012022_files/libs/revealjs/plugin/reveal-menu/quarto-menu.css" rel="stylesheet">
<link href="osupdates11012022_files/libs/revealjs/plugin/quarto-support/footer.css" rel="stylesheet">
<style type="text/css">
.callout {
margin-top: 1em;
margin-bottom: 1em;
border-radius: .25rem;
}
.callout.callout-style-simple {
padding: 0em 0.5em;
border-left: solid #acacac .3rem;
border-right: solid 1px silver;
border-top: solid 1px silver;
border-bottom: solid 1px silver;
display: flex;
}
.callout.callout-style-default {
border-left: solid #acacac .3rem;
border-right: solid 1px silver;
border-top: solid 1px silver;
border-bottom: solid 1px silver;
}
.callout .callout-body-container {
flex-grow: 1;
}
.callout.callout-style-simple .callout-body {
font-size: 1rem;
font-weight: 400;
}
.callout.callout-style-default .callout-body {
font-size: 0.9rem;
font-weight: 400;
}
.callout.callout-captioned.callout-style-simple .callout-body {
margin-top: 0.2em;
}
.callout:not(.callout-captioned) .callout-body {
display: flex;
}
.callout:not(.no-icon).callout-captioned.callout-style-simple .callout-content {
padding-left: 1.6em;
}
.callout.callout-captioned .callout-header {
padding-top: 0.2em;
margin-bottom: -0.2em;
}
.callout.callout-captioned .callout-caption p {
margin-top: 0.5em;
margin-bottom: 0.5em;
}
.callout.callout-captioned.callout-style-simple .callout-content p {
margin-top: 0;
}
.callout.callout-captioned.callout-style-default .callout-content p {
margin-top: 0.7em;
}
.callout.callout-style-simple div.callout-caption {
border-bottom: none;
font-size: .9rem;
font-weight: 600;
opacity: 75%;
}
.callout.callout-style-default div.callout-caption {
border-bottom: none;
font-weight: 600;
opacity: 85%;
font-size: 0.9rem;
padding-left: 0.5em;
padding-right: 0.5em;
}
.callout.callout-style-default div.callout-content {
padding-left: 0.5em;
padding-right: 0.5em;
}
.callout.callout-style-simple .callout-icon::before {
height: 1rem;
width: 1rem;
display: inline-block;
content: "";
background-repeat: no-repeat;
background-size: 1rem 1rem;
}
.callout.callout-style-default .callout-icon::before {
height: 0.9rem;
width: 0.9rem;
display: inline-block;
content: "";
background-repeat: no-repeat;
background-size: 0.9rem 0.9rem;
}
.callout-caption {
display: flex
}
.callout-icon::before {
margin-top: 1rem;
padding-right: .5rem;
}
.callout.no-icon::before {
display: none !important;
}
.callout.callout-captioned .callout-body > .callout-content > :last-child {
margin-bottom: 0.5rem;
}
.callout.callout-captioned .callout-icon::before {
margin-top: .5rem;
padding-right: .5rem;
}
.callout:not(.callout-captioned) .callout-icon::before {
margin-top: 1rem;
padding-right: .5rem;
}
/* Callout Types */
div.callout-note {
border-left-color: #4582ec !important;
}
div.callout-note .callout-icon::before {
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}
div.callout-note.callout-style-default .callout-caption {
background-color: #dae6fb
}
div.callout-important {
border-left-color: #d9534f !important;
}
div.callout-important .callout-icon::before {
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}
div.callout-important.callout-style-default .callout-caption {
background-color: #f7dddc
}
div.callout-warning {
border-left-color: #f0ad4e !important;
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<body class="quarto-light">
<div class="reveal">
<div class="slides">
<section id="title-slide" class="center">
<h1 class="title">OPEN SCIENCE UPDATES</h1>
<p class="author">Dr. Marcus Beck, <a href="mailto:mbeck@tbep.org" class="email">mbeck@tbep.org</a></p>
<p class="institute">Tampa Bay Estuary Program</p>
<p class="date">11/01/2022</p>
</section>
<section id="roles-and-responsibilities" class="slide level2">
<h2>ROLES AND RESPONSIBILITIES</h2>
<ol type="1">
<li><p>Support development of open science products at TBEP</p></li>
<li><p>Rank priority research areas for developing open science products</p></li>
<li><p>Facilitate training activities</p></li>
</ol>
<p><a href="https://docs.google.com/document/d/1w6dVTwfYYDRVzGPXy0jyHxV4mwOutEY_ISMP1oAdZ_c/edit">Guiding Document</a></p>
</section>
<section id="usepa-archive-guidance" class="slide level2">
<h2>USEPA ARCHIVE GUIDANCE</h2>
<div class="columns">
<div class="column" style="width:60%;">
<ul>
<li>Last meeting: <a href="https://drive.google.com/drive/u/0/folders/1EyX5a4IXf-qHVnUnLr-3GuB8_9nK9hmW">Demistifying Data Repositories</a></li>
<li>Using Data Repositories for Ocean and Coastal Acidification Monitoring Data</li>
<li>Tampa Bay OA monitoring <a href="https://www.usgs.gov/centers/spcmsc/news/tampa-bay-coastal-acidification-research-featured-epa-national-estuary-program"><img data-src="figure/tboa.jpg"></a></li>
</ul>
</div><div class="column" style="width:40%;">
<div class="quarto-figure quarto-figure-center">
<figure>
<p><a href="https://epa.gov/system/files/documents/2022-09/12065_NEP%20Report_051622.pdf"><img data-src="figure/archiveoa.jpg"></a></p>
</figure>
</div>
</div>
</div>
</section>
<section id="the-openscapes-flywheel" class="slide level2">
<h2>THE OPENSCAPES FLYWHEEL</h2>
<ul>
<li>New preprint describing a framework for managers to facilitate/scale OS practices: <a href="https://eartharxiv.org/repository/view/4560/">link</a></li>
<li>Useful examples and metaphor for adopting OS at the institutional level
<ul>
<li>Engage bright spots</li>
<li>Empower a learning culture</li>
<li>Amplify Open science leaders</li>
</ul></li>
<li>Slow down to speed up!</li>
</ul>
</section>
<section id="trash-free-waters-tfw" class="slide level2">
<h2>TRASH FREE WATERS (TFW)</h2>
<ul>
<li>An EPA initiative to reduce trash entering surface waters by preventing waste at its source</li>
<li>TBEP has been implementing a <a href="https://tbep.org/our-work/education/trash-free-waters/">TFW initiative</a> since 2019 with five partners</li>
<li>Will result in a <a href="https://tbep.org/our-work/education/trash-free-waters/#plan">Litter Management Plan</a></li>
</ul>
<img data-src="figure/litterdevices.jpg" class="r-stretch"></section>
<section id="trash-free-waters-tfw-1" class="slide level2">
<h2>TRASH FREE WATERS (TFW)</h2>
<ul>
<li>Data website in development: <a href="https://tbep-tech.github.io/trash-free-waters/">link</a></li>
</ul>
<img data-src="figure/tfwdata.jpg" class="r-stretch quarto-figure-center"></section>
<section id="ccha-updates" class="slide level2">
<h2>CCHA UPDATES</h2>
<div class="columns">
<div class="column" style="width:60%;">
<ul>
<li>Assess long-term effects of sea level rise on emergent tidal wetlands</li>
<li>Monitor transition zones from shoreline to uplands at ten locations</li>
<li>Repeat surveys every 3-5 years for next few decades</li>
</ul>
</div><div class="column" style="width:40%;">
<p><img data-src="figure/sitemap.jpg"></p>
</div>
</div>
</section>
<section id="ccha-updates-1" class="slide level2">
<h2>CCHA UPDATES</h2>
<ul>
<li>Provide recommendations on reduced sampling effort for vegetation transects</li>
</ul>
<img data-src="figure/transectdesign.jpg" class="r-stretch quarto-figure-center"></section>
<section id="ccha-updates-2" class="slide level2">
<h2>CCHA UPDATES</h2>
<ul>
<li>Analysis of reduced effort: <a href="https://tbep-tech.github.io/ccha-sampling-effort/">link</a></li>
<li>Why OS is important for this project:
<ul>
<li>Need transparency with partners</li>
<li>Need replicable analyses</li>
<li>Need record of the changes</li>
</ul></li>
</ul>
</section>
<section id="quarto" class="slide level2">
<h2>QUARTO</h2>
<ul>
<li>An open-source scientific and technical publishing system</li>
<li>Recently unveiled earlier this year
<ul>
<li><a href="https://www.apreshill.com/blog/2022-04-we-dont-talk-about-quarto/">We don’t talk about Quarto</a></li>
<li><a href="https://quarto.org/docs/blog/posts/2022-06-21-rstudio-conf-2022-quarto/">Quarto at RStudio Conference</a></li>
</ul></li>
<li>A successor to RMarkdown - language agnostic (works with R, Python, Julia, and Observable) <br> <br> <a href="https://quarto.org/"><img data-src="figure/quarto.png"></a></li>
</ul>
</section>
<section id="open-science-training" class="slide level2">
<h2>OPEN SCIENCE TRAINING</h2>
<img data-src="figure/2023%20Open%20Science%20Workshop.png" class="r-stretch quarto-figure-center"><p><a href="http://events.constantcontact.com/register/event?llr=e6budacab&oeidk=a07ejgibn3w5d1be2fc">Register</a> (email forthcoming)</p>
</section>
<section id="meetings" class="slide level2">
<h2>2023 MEETINGS</h2>
<ul>
<li>Proposed schedule
<ul>
<li>Feb</li>
<li>May</li>
<li>Aug</li>
<li>Nov</li>
</ul></li>
<li>Send me or Meagan ideas for speakers and topics!</li>
</ul>
<img src="figure/TBEP_logo.png" class="slide-logo r-stretch"><div class="footer footer-default">
<p>Tampa Bay Estuary Program, Open Science Subcommittee</p>
</div>
</section>
</div>
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