From 01bffbaf82a5259ea71c52b99dd71adea92faeed Mon Sep 17 00:00:00 2001
From: Andrea Telatin <15690844+telatin@users.noreply.github.com>
Date: Sun, 6 Feb 2022 20:13:07 +0000
Subject: [PATCH] unique-reads

---
 docs/tools/bamtocounts.md | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/docs/tools/bamtocounts.md b/docs/tools/bamtocounts.md
index 4344333..a92b3a2 100644
--- a/docs/tools/bamtocounts.md
+++ b/docs/tools/bamtocounts.md
@@ -5,7 +5,11 @@ sort: 2
 # BamToCounts
 
 A program that counts the number of reads per target in
-a BAM file.
+a BAM file. The BAM file does not need to be sorted.
+
+Overlapping features will be reported each with all the
+counts, so a read mapped in a shared interval will be counted
+more than once.
 
 ## Help screen