Fix links

Author: nfrerebeau

README.Rmd

@@ -35,7 +35,7 @@ knitr::opts_chunk$set(
 
 An easy way to examine archaeological count data. **tabula** provides several tests and measures of diversity: heterogeneity and evenness (Brillouin, Shannon, Simpson, etc.), richness and rarefaction (Chao1, Chao2, ACE, ICE, etc.), turnover and similarity (Brainerd-Robinson, etc.). The package make it easy to visualize count data and statistical thresholds: rank vs. abundance plots, heatmaps, @ford1962 and @bertin1977 diagrams.
 
-[**kairos**](https://www.tesselle.org/kairos/) is a companion package to **tabula** that provides functions for chronological modeling and dating of archaeological assemblages from count data.
+[**kairos**](https://packages.tesselle.org/kairos/) is a companion package to **tabula** that provides functions for chronological modeling and dating of archaeological assemblages from count data.
 
 ```{r citation, echo=FALSE, comment=''}
 utils::citation("tabula")
@@ -111,6 +111,8 @@ heterogeneity(mississippi, method = "shannon")
 Measure diversity by comparing to simulated assemblages:
 
 ```{r sample-size, fig.width=3.5, fig.height=3.5, fig.show="hold"}
+set.seed(12345)
+
 ## Data from Conkey 1980, Kintigh 1989, p. 28
 chevelon %>%
   heterogeneity(method = "shannon") %>%

README.md

@@ -44,9 +44,9 @@ etc.). The package make it easy to visualize count data and statistical
 thresholds: rank vs. abundance plots, heatmaps, Ford (1962) and Bertin
 (1977) diagrams.
 
-[**kairos**](https://www.tesselle.org/kairos/) is a companion package to
-**tabula** that provides functions for chronological modeling and dating
-of archaeological assemblages from count data.
+[**kairos**](https://packages.tesselle.org/kairos/) is a companion
+package to **tabula** that provides functions for chronological modeling
+and dating of archaeological assemblages from count data.
 
 
     To cite tabula in publications use:
@@ -158,6 +158,8 @@ heterogeneity(mississippi, method = "shannon")
 Measure diversity by comparing to simulated assemblages:
 
 ``` r
+set.seed(12345)
+
 ## Data from Conkey 1980, Kintigh 1989, p. 28
 chevelon %>%
   heterogeneity(method = "shannon") %>%

_pkgdown.yml

@@ -10,9 +10,6 @@ reference:
 - title: Diversity Measures
   contents:
   - has_concept("diversity measures")
-- title: Seriation
-  contents:
-  - has_concept("seriation")
 - title: Visualization
   contents:
   - has_concept("plot methods")
@@ -34,7 +31,5 @@ navbar:
       menu:
       - text: Diversity Measures
         href: articles/diversity.html
-      - text: Seriation Methods
-        href: articles/seriation.html
       - text: Bibliography
         href: articles/bibliography.html

cran-comments.md

@@ -10,6 +10,7 @@
 
 * CRAN package check warning ("replacing previous import") has been fixed.
 * Some links in the documentation point to articles behind paywalls that may return a 403 error.
+* This is a resubmission.
 
 ## revdepcheck results