From 2f9d2b386867349670b5e214dd8da93035b40283 Mon Sep 17 00:00:00 2001 From: theGreatHerrLebert Date: Tue, 7 Jan 2025 09:46:15 +0000 Subject: [PATCH] deploy: c1476c04f33a642b9eed59e37a8e46646ae63c7b --- main/help.html | 2 +- .../data/dataset/struct.TimsDataset.html | 2 +- .../data/dda/struct.PASEFDDAFragment.html | 4 ++-- .../data/dda/struct.TimsDatasetDDA.html | 2 +- .../data/dia/struct.TimsDatasetDIA.html | 6 ++--- .../data/handle/enum.TimsDataLoader.html | 2 +- .../handle/struct.TimsInMemoryLoader.html | 2 +- .../data/handle/struct.TimsLazyLoder.html | 2 +- main/rustdf/data/handle/trait.TimsData.html | 8 +++---- .../data/utility/fn.compress_collection.html | 2 +- .../sim/containers/struct.FramesSim.html | 2 +- main/rustdf/sim/containers/struct.IonSim.html | 6 ++--- .../sim/containers/struct.PeptidesSim.html | 4 ++-- ...ruct.TimsTofSyntheticsFrameBuilderDIA.html | 24 +++++++++---------- .../struct.TimsTofSyntheticsDataHandle.html | 8 +++---- ...imsTofSyntheticsPrecursorFrameBuilder.html | 12 +++++----- main/settings.html | 2 +- .../collision/trait.TimsTofCollisionEnergy.js | 4 ++-- 18 files changed, 47 insertions(+), 47 deletions(-) diff --git a/main/help.html b/main/help.html index b7a381f8..b44c28c2 100644 --- a/main/help.html +++ b/main/help.html @@ -1 +1 @@ -Help

Rustdoc help

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\ No newline at end of file +Help

Rustdoc help

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\ No newline at end of file diff --git a/main/rustdf/data/dataset/struct.TimsDataset.html b/main/rustdf/data/dataset/struct.TimsDataset.html index 77dd9874..d0762790 100644 --- a/main/rustdf/data/dataset/struct.TimsDataset.html +++ b/main/rustdf/data/dataset/struct.TimsDataset.html @@ -13,7 +13,7 @@ &self, frame_id: u32, inverse_mobility_values: &Vec<f64>, -) -> Vec<u32>
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impl TimsData for TimsDataset

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fn get_frame(&self, frame_id: u32) -> TimsFrame

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fn get_raw_frame(&self, frame_id: u32) -> RawTimsFrame

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fn get_slice(&self, frame_ids: Vec<u32>, num_threads: usize) -> TimsSlice

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fn get_acquisition_mode(&self) -> AcquisitionMode

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fn get_frame_count(&self) -> i32

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fn get_data_path(&self) -> &str

Auto Trait Implementations§

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impl Freeze for TimsDataset

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impl RefUnwindSafe for TimsDataset

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impl Send for TimsDataset

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impl Sync for TimsDataset

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impl Unpin for TimsDataset

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impl UnwindSafe for TimsDataset

Blanket Implementations§

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impl<T> Any for T
where +) -> Vec<u32>

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impl TimsData for TimsDataset

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fn get_frame(&self, frame_id: u32) -> TimsFrame

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fn get_raw_frame(&self, frame_id: u32) -> RawTimsFrame

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fn get_slice(&self, frame_ids: Vec<u32>, num_threads: usize) -> TimsSlice

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fn get_acquisition_mode(&self) -> AcquisitionMode

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fn get_frame_count(&self) -> i32

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fn get_data_path(&self) -> &str

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impl Freeze for TimsDataset

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impl RefUnwindSafe for TimsDataset

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impl Send for TimsDataset

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impl Sync for TimsDataset

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impl Unpin for TimsDataset

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impl UnwindSafe for TimsDataset

Blanket Implementations§

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impl<T> Any for T
where T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more
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impl<T> Borrow<T> for T
where T: ?Sized,

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fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more
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impl<T> BorrowMut<T> for T
where T: ?Sized,

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fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more
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impl<T> From<T> for T

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fn from(t: T) -> T

Returns the argument unchanged.

diff --git a/main/rustdf/data/dda/struct.PASEFDDAFragment.html b/main/rustdf/data/dda/struct.PASEFDDAFragment.html index cfb18e05..028e5a31 100644 --- a/main/rustdf/data/dda/struct.PASEFDDAFragment.html +++ b/main/rustdf/data/dda/struct.PASEFDDAFragment.html @@ -2,8 +2,8 @@ pub frame_id: u32, pub precursor_id: u32, pub collision_energy: f64, - pub selected_fragment: TimsFrame, -}

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§frame_id: u32§precursor_id: u32§collision_energy: f64§selected_fragment: TimsFrame

Trait Implementations§

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impl Clone for PASEFDDAFragment

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fn clone(&self) -> PASEFDDAFragment

Returns a copy of the value. Read more
1.0.0 · source§

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more

Auto Trait Implementations§

Blanket Implementations§

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impl<T> Any for T
where + pub selected_fragment: TimsFrame, +}

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§frame_id: u32§precursor_id: u32§collision_energy: f64§selected_fragment: TimsFrame

Trait Implementations§

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impl Clone for PASEFDDAFragment

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fn clone(&self) -> PASEFDDAFragment

Returns a copy of the value. Read more
1.0.0 · source§

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more

Auto Trait Implementations§

Blanket Implementations§

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impl<T> Any for T
where T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more
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impl<T> Borrow<T> for T
where T: ?Sized,

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fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more
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impl<T> BorrowMut<T> for T
where T: ?Sized,

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fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more
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impl<T> CloneToUninit for T
where diff --git a/main/rustdf/data/dda/struct.TimsDatasetDDA.html b/main/rustdf/data/dda/struct.TimsDatasetDDA.html index 35249f8c..9bb40599 100644 --- a/main/rustdf/data/dda/struct.TimsDatasetDDA.html +++ b/main/rustdf/data/dda/struct.TimsDatasetDDA.html @@ -14,7 +14,7 @@ &self, frame_id: u32, inverse_mobility_values: &Vec<f64>, -) -> Vec<u32>

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impl TimsData for TimsDatasetDDA

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fn get_frame(&self, frame_id: u32) -> TimsFrame

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fn get_raw_frame(&self, frame_id: u32) -> RawTimsFrame

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fn get_slice(&self, frame_ids: Vec<u32>, num_threads: usize) -> TimsSlice

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fn get_acquisition_mode(&self) -> AcquisitionMode

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fn get_frame_count(&self) -> i32

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fn get_data_path(&self) -> &str

Auto Trait Implementations§

Blanket Implementations§

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impl<T> Any for T
where +) -> Vec<u32>

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impl TimsData for TimsDatasetDDA

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fn get_frame(&self, frame_id: u32) -> TimsFrame

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fn get_raw_frame(&self, frame_id: u32) -> RawTimsFrame

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fn get_slice(&self, frame_ids: Vec<u32>, num_threads: usize) -> TimsSlice

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fn get_acquisition_mode(&self) -> AcquisitionMode

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fn get_frame_count(&self) -> i32

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fn get_data_path(&self) -> &str

Auto Trait Implementations§

Blanket Implementations§

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impl<T> Any for T
where T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more
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impl<T> Borrow<T> for T
where T: ?Sized,

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fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more
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impl<T> BorrowMut<T> for T
where T: ?Sized,

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fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more
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impl<T> From<T> for T

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fn from(t: T) -> T

Returns the argument unchanged.

diff --git a/main/rustdf/data/dia/struct.TimsDatasetDIA.html b/main/rustdf/data/dia/struct.TimsDatasetDIA.html index ef0671e4..f3f8eb36 100644 --- a/main/rustdf/data/dia/struct.TimsDatasetDIA.html +++ b/main/rustdf/data/dia/struct.TimsDatasetDIA.html @@ -14,13 +14,13 @@ num_frames: usize, max_intensity: f64, take_probability: f64, -) -> TimsFrame
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pub fn sample_fragment_signal( +) -> TimsFrame

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pub fn sample_fragment_signal( &self, num_frames: usize, window_group: u32, max_intensity: f64, take_probability: f64, -) -> TimsFrame

Trait Implementations§

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impl IndexConverter for TimsDatasetDIA

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fn tof_to_mz(&self, frame_id: u32, tof_values: &Vec<u32>) -> Vec<f64>

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fn mz_to_tof(&self, frame_id: u32, mz_values: &Vec<f64>) -> Vec<u32>

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fn scan_to_inverse_mobility( +) -> TimsFrame

Trait Implementations§

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impl IndexConverter for TimsDatasetDIA

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fn tof_to_mz(&self, frame_id: u32, tof_values: &Vec<u32>) -> Vec<f64>

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fn mz_to_tof(&self, frame_id: u32, mz_values: &Vec<f64>) -> Vec<u32>

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fn scan_to_inverse_mobility( &self, frame_id: u32, scan_values: &Vec<u32>, @@ -28,7 +28,7 @@ &self, frame_id: u32, inverse_mobility_values: &Vec<f64>, -) -> Vec<u32>

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impl TimsData for TimsDatasetDIA

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fn get_frame(&self, frame_id: u32) -> TimsFrame

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fn get_raw_frame(&self, frame_id: u32) -> RawTimsFrame

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fn get_slice(&self, frame_ids: Vec<u32>, num_threads: usize) -> TimsSlice

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fn get_acquisition_mode(&self) -> AcquisitionMode

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fn get_frame_count(&self) -> i32

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fn get_data_path(&self) -> &str

Auto Trait Implementations§

Blanket Implementations§

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impl<T> Any for T
where +) -> Vec<u32>

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impl TimsData for TimsDatasetDIA

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fn get_frame(&self, frame_id: u32) -> TimsFrame

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fn get_raw_frame(&self, frame_id: u32) -> RawTimsFrame

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fn get_slice(&self, frame_ids: Vec<u32>, num_threads: usize) -> TimsSlice

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fn get_acquisition_mode(&self) -> AcquisitionMode

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fn get_frame_count(&self) -> i32

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fn get_data_path(&self) -> &str

Auto Trait Implementations§

Blanket Implementations§

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impl<T> Any for T
where T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more
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impl<T> Borrow<T> for T
where T: ?Sized,

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fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more
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impl<T> BorrowMut<T> for T
where T: ?Sized,

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fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more
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impl<T> From<T> for T

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fn from(t: T) -> T

Returns the argument unchanged.

diff --git a/main/rustdf/data/handle/enum.TimsDataLoader.html b/main/rustdf/data/handle/enum.TimsDataLoader.html index 745af62c..21e8dd79 100644 --- a/main/rustdf/data/handle/enum.TimsDataLoader.html +++ b/main/rustdf/data/handle/enum.TimsDataLoader.html @@ -21,7 +21,7 @@ tof_max_index: u32, mz_lower: f64, mz_upper: f64, -) -> Self
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pub fn get_index_converter(&self) -> &dyn IndexConverter

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impl TimsData for TimsDataLoader

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fn get_frame(&self, frame_id: u32) -> TimsFrame

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fn get_raw_frame(&self, frame_id: u32) -> RawTimsFrame

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fn get_slice(&self, frame_ids: Vec<u32>, num_threads: usize) -> TimsSlice

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fn get_acquisition_mode(&self) -> AcquisitionMode

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fn get_frame_count(&self) -> i32

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fn get_data_path(&self) -> &str

Auto Trait Implementations§

Blanket Implementations§

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impl<T> Any for T
where +) -> Self

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pub fn get_index_converter(&self) -> &dyn IndexConverter

Trait Implementations§

Auto Trait Implementations§

Blanket Implementations§

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impl<T> Any for T
where T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more
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impl<T> Borrow<T> for T
where T: ?Sized,

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fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more
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impl<T> BorrowMut<T> for T
where T: ?Sized,

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fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more
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impl<T> From<T> for T

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fn from(t: T) -> T

Returns the argument unchanged.

diff --git a/main/rustdf/data/handle/struct.TimsInMemoryLoader.html b/main/rustdf/data/handle/struct.TimsInMemoryLoader.html index c5153567..a807f050 100644 --- a/main/rustdf/data/handle/struct.TimsInMemoryLoader.html +++ b/main/rustdf/data/handle/struct.TimsInMemoryLoader.html @@ -2,7 +2,7 @@ pub raw_data_layout: TimsRawDataLayout, pub index_converter: TimsIndexConverter, /* private fields */ -}

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§raw_data_layout: TimsRawDataLayout§index_converter: TimsIndexConverter

Trait Implementations§

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impl TimsData for TimsInMemoryLoader

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fn get_frame(&self, frame_id: u32) -> TimsFrame

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fn get_raw_frame(&self, frame_id: u32) -> RawTimsFrame

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fn get_slice(&self, frame_ids: Vec<u32>, num_threads: usize) -> TimsSlice

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fn get_acquisition_mode(&self) -> AcquisitionMode

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fn get_frame_count(&self) -> i32

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fn get_data_path(&self) -> &str

Auto Trait Implementations§

Blanket Implementations§

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impl<T> Any for T
where +}

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§raw_data_layout: TimsRawDataLayout§index_converter: TimsIndexConverter

Trait Implementations§

Auto Trait Implementations§

Blanket Implementations§

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impl<T> Any for T
where T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more
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impl<T> Borrow<T> for T
where T: ?Sized,

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fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more
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impl<T> BorrowMut<T> for T
where T: ?Sized,

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fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more
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impl<T> From<T> for T

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fn from(t: T) -> T

Returns the argument unchanged.

diff --git a/main/rustdf/data/handle/struct.TimsLazyLoder.html b/main/rustdf/data/handle/struct.TimsLazyLoder.html index e8be6f53..ce4bad5a 100644 --- a/main/rustdf/data/handle/struct.TimsLazyLoder.html +++ b/main/rustdf/data/handle/struct.TimsLazyLoder.html @@ -1,7 +1,7 @@ TimsLazyLoder in rustdf::data::handle - Rust
rustdf::data::handle

Struct TimsLazyLoder

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pub struct TimsLazyLoder {
     pub raw_data_layout: TimsRawDataLayout,
     pub index_converter: TimsIndexConverter,
-}

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§raw_data_layout: TimsRawDataLayout§index_converter: TimsIndexConverter

Trait Implementations§

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impl TimsData for TimsLazyLoder

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fn get_frame(&self, frame_id: u32) -> TimsFrame

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fn get_raw_frame(&self, frame_id: u32) -> RawTimsFrame

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fn get_slice(&self, frame_ids: Vec<u32>, _num_threads: usize) -> TimsSlice

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fn get_acquisition_mode(&self) -> AcquisitionMode

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fn get_frame_count(&self) -> i32

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fn get_data_path(&self) -> &str

Auto Trait Implementations§

Blanket Implementations§

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impl<T> Any for T
where +}

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§raw_data_layout: TimsRawDataLayout§index_converter: TimsIndexConverter

Trait Implementations§

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impl TimsData for TimsLazyLoder

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fn get_frame(&self, frame_id: u32) -> TimsFrame

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fn get_raw_frame(&self, frame_id: u32) -> RawTimsFrame

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fn get_slice(&self, frame_ids: Vec<u32>, _num_threads: usize) -> TimsSlice

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fn get_acquisition_mode(&self) -> AcquisitionMode

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fn get_frame_count(&self) -> i32

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fn get_data_path(&self) -> &str

Auto Trait Implementations§

Blanket Implementations§

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impl<T> Any for T
where T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more
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impl<T> Borrow<T> for T
where T: ?Sized,

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fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more
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impl<T> BorrowMut<T> for T
where T: ?Sized,

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fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more
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impl<T> From<T> for T

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fn from(t: T) -> T

Returns the argument unchanged.

diff --git a/main/rustdf/data/handle/trait.TimsData.html b/main/rustdf/data/handle/trait.TimsData.html index 307793bb..35b39c21 100644 --- a/main/rustdf/data/handle/trait.TimsData.html +++ b/main/rustdf/data/handle/trait.TimsData.html @@ -1,9 +1,9 @@ TimsData in rustdf::data::handle - Rust
rustdf::data::handle

Trait TimsData

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pub trait TimsData {
     // Required methods
-    fn get_frame(&self, frame_id: u32) -> TimsFrame;
-    fn get_raw_frame(&self, frame_id: u32) -> RawTimsFrame;
-    fn get_slice(&self, frame_ids: Vec<u32>, num_threads: usize) -> TimsSlice;
+    fn get_frame(&self, frame_id: u32) -> TimsFrame;
+    fn get_raw_frame(&self, frame_id: u32) -> RawTimsFrame;
+    fn get_slice(&self, frame_ids: Vec<u32>, num_threads: usize) -> TimsSlice;
     fn get_acquisition_mode(&self) -> AcquisitionMode;
     fn get_frame_count(&self) -> i32;
     fn get_data_path(&self) -> &str;
-}

Required Methods§

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fn get_frame(&self, frame_id: u32) -> TimsFrame

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fn get_raw_frame(&self, frame_id: u32) -> RawTimsFrame

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fn get_slice(&self, frame_ids: Vec<u32>, num_threads: usize) -> TimsSlice

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fn get_acquisition_mode(&self) -> AcquisitionMode

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fn get_frame_count(&self) -> i32

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fn get_data_path(&self) -> &str

Implementors§

\ No newline at end of file +}

Required Methods§

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fn get_frame(&self, frame_id: u32) -> TimsFrame

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fn get_raw_frame(&self, frame_id: u32) -> RawTimsFrame

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fn get_slice(&self, frame_ids: Vec<u32>, num_threads: usize) -> TimsSlice

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fn get_acquisition_mode(&self) -> AcquisitionMode

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fn get_frame_count(&self) -> i32

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fn get_data_path(&self) -> &str

Implementors§

\ No newline at end of file diff --git a/main/rustdf/data/utility/fn.compress_collection.html b/main/rustdf/data/utility/fn.compress_collection.html index 2947f6e7..e9fb6a27 100644 --- a/main/rustdf/data/utility/fn.compress_collection.html +++ b/main/rustdf/data/utility/fn.compress_collection.html @@ -1,5 +1,5 @@ compress_collection in rustdf::data::utility - Rust
rustdf::data::utility

Function compress_collection

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pub fn compress_collection(
-    frames: Vec<TimsFrame>,
+    frames: Vec<TimsFrame>,
     max_scan_count: u32,
     compression_level: i32,
     num_threads: usize,
diff --git a/main/rustdf/sim/containers/struct.FramesSim.html b/main/rustdf/sim/containers/struct.FramesSim.html
index db134439..2f51a6e8 100644
--- a/main/rustdf/sim/containers/struct.FramesSim.html
+++ b/main/rustdf/sim/containers/struct.FramesSim.html
@@ -2,7 +2,7 @@
     pub frame_id: u32,
     pub time: f32,
     pub ms_type: i64,
-}

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§frame_id: u32§time: f32§ms_type: i64

Implementations§

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impl FramesSim

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pub fn new(frame_id: u32, time: f32, ms_type: i64) -> Self

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pub fn parse_ms_type(&self) -> MsType

Trait Implementations§

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impl Clone for FramesSim

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fn clone(&self) -> FramesSim

Returns a copy of the value. Read more
1.0.0 · source§

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more
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impl Debug for FramesSim

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

Auto Trait Implementations§

Blanket Implementations§

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impl<T> Any for T
where +}

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§frame_id: u32§time: f32§ms_type: i64

Implementations§

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impl FramesSim

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pub fn new(frame_id: u32, time: f32, ms_type: i64) -> Self

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pub fn parse_ms_type(&self) -> MsType

Trait Implementations§

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impl Clone for FramesSim

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fn clone(&self) -> FramesSim

Returns a copy of the value. Read more
1.0.0 · source§

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more
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impl Debug for FramesSim

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

Auto Trait Implementations§

Blanket Implementations§

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impl<T> Any for T
where T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more
source§

impl<T> Borrow<T> for T
where T: ?Sized,

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fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more
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impl<T> BorrowMut<T> for T
where T: ?Sized,

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fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more
source§

impl<T> CloneToUninit for T
where diff --git a/main/rustdf/sim/containers/struct.IonSim.html b/main/rustdf/sim/containers/struct.IonSim.html index 5349afa3..caa6947b 100644 --- a/main/rustdf/sim/containers/struct.IonSim.html +++ b/main/rustdf/sim/containers/struct.IonSim.html @@ -5,16 +5,16 @@ pub charge: i8, pub relative_abundance: f32, pub mobility: f32, - pub simulated_spectrum: MzSpectrum, + pub simulated_spectrum: MzSpectrum, pub scan_distribution: SignalDistribution, -}

Fields§

§ion_id: u32§peptide_id: u32§sequence: String§charge: i8§relative_abundance: f32§mobility: f32§simulated_spectrum: MzSpectrum§scan_distribution: SignalDistribution

Implementations§

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impl IonSim

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pub fn new( +}

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§ion_id: u32§peptide_id: u32§sequence: String§charge: i8§relative_abundance: f32§mobility: f32§simulated_spectrum: MzSpectrum§scan_distribution: SignalDistribution

Implementations§

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impl IonSim

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pub fn new( ion_id: u32, peptide_id: u32, sequence: String, charge: i8, relative_abundance: f32, mobility: f32, - simulated_spectrum: MzSpectrum, + simulated_spectrum: MzSpectrum, scan_occurrence: Vec<u32>, scan_abundance: Vec<f32>, ) -> Self

Trait Implementations§

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impl Clone for IonSim

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fn clone(&self) -> IonSim

Returns a copy of the value. Read more
1.0.0 · source§

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more
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impl Debug for IonSim

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

Auto Trait Implementations§

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impl Freeze for IonSim

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impl RefUnwindSafe for IonSim

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impl Send for IonSim

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impl Sync for IonSim

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impl Unpin for IonSim

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impl UnwindSafe for IonSim

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impl<T> Any for T
where diff --git a/main/rustdf/sim/containers/struct.PeptidesSim.html b/main/rustdf/sim/containers/struct.PeptidesSim.html index 83f9d431..8eab3569 100644 --- a/main/rustdf/sim/containers/struct.PeptidesSim.html +++ b/main/rustdf/sim/containers/struct.PeptidesSim.html @@ -1,7 +1,7 @@ PeptidesSim in rustdf::sim::containers - Rust
rustdf::sim::containers

Struct PeptidesSim

source 
pub struct PeptidesSim {
Show 14 fields
     pub protein_id: u32,
     pub peptide_id: u32,
-    pub sequence: PeptideSequence,
+    pub sequence: PeptideSequence,
     pub proteins: String,
     pub decoy: bool,
     pub missed_cleavages: i8,
@@ -13,7 +13,7 @@
     pub frame_start: u32,
     pub frame_end: u32,
     pub frame_distribution: SignalDistribution,
-
}

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§protein_id: u32§peptide_id: u32§sequence: PeptideSequence§proteins: String§decoy: bool§missed_cleavages: i8§n_term: Option<bool>§c_term: Option<bool>§mono_isotopic_mass: f32§retention_time: f32§events: f32§frame_start: u32§frame_end: u32§frame_distribution: SignalDistribution

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impl PeptidesSim

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pub fn new( +

}

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§protein_id: u32§peptide_id: u32§sequence: PeptideSequence§proteins: String§decoy: bool§missed_cleavages: i8§n_term: Option<bool>§c_term: Option<bool>§mono_isotopic_mass: f32§retention_time: f32§events: f32§frame_start: u32§frame_end: u32§frame_distribution: SignalDistribution

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impl PeptidesSim

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pub fn new( protein_id: u32, peptide_id: u32, sequence: String, diff --git a/main/rustdf/sim/dia/struct.TimsTofSyntheticsFrameBuilderDIA.html b/main/rustdf/sim/dia/struct.TimsTofSyntheticsFrameBuilderDIA.html index 2e3e5930..914f19c4 100644 --- a/main/rustdf/sim/dia/struct.TimsTofSyntheticsFrameBuilderDIA.html +++ b/main/rustdf/sim/dia/struct.TimsTofSyntheticsFrameBuilderDIA.html @@ -1,11 +1,11 @@ TimsTofSyntheticsFrameBuilderDIA in rustdf::sim::dia - Rust
rustdf::sim::dia

Struct TimsTofSyntheticsFrameBuilderDIA

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pub struct TimsTofSyntheticsFrameBuilderDIA {
     pub path: String,
     pub precursor_frame_builder: TimsTofSyntheticsPrecursorFrameBuilder,
-    pub transmission_settings: TimsTransmissionDIA,
-    pub fragmentation_settings: TimsTofCollisionEnergyDIA,
-    pub fragment_ions: Option<BTreeMap<(u32, i8, i8), (PeptideProductIonSeriesCollection, Vec<MzSpectrum>)>>,
-    pub fragment_ions_annotated: Option<BTreeMap<(u32, i8, i8), (PeptideProductIonSeriesCollection, Vec<MzSpectrumAnnotated>)>>,
-}

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§path: String§precursor_frame_builder: TimsTofSyntheticsPrecursorFrameBuilder§transmission_settings: TimsTransmissionDIA§fragmentation_settings: TimsTofCollisionEnergyDIA§fragment_ions: Option<BTreeMap<(u32, i8, i8), (PeptideProductIonSeriesCollection, Vec<MzSpectrum>)>>§fragment_ions_annotated: Option<BTreeMap<(u32, i8, i8), (PeptideProductIonSeriesCollection, Vec<MzSpectrumAnnotated>)>>

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impl TimsTofSyntheticsFrameBuilderDIA

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pub fn new( + pub transmission_settings: TimsTransmissionDIA, + pub fragmentation_settings: TimsTofCollisionEnergyDIA, + pub fragment_ions: Option<BTreeMap<(u32, i8, i8), (PeptideProductIonSeriesCollection, Vec<MzSpectrum>)>>, + pub fragment_ions_annotated: Option<BTreeMap<(u32, i8, i8), (PeptideProductIonSeriesCollection, Vec<MzSpectrumAnnotated>)>>, +}

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§path: String§precursor_frame_builder: TimsTofSyntheticsPrecursorFrameBuilder§transmission_settings: TimsTransmissionDIA§fragmentation_settings: TimsTofCollisionEnergyDIA§fragment_ions: Option<BTreeMap<(u32, i8, i8), (PeptideProductIonSeriesCollection, Vec<MzSpectrum>)>>§fragment_ions_annotated: Option<BTreeMap<(u32, i8, i8), (PeptideProductIonSeriesCollection, Vec<MzSpectrumAnnotated>)>>

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impl TimsTofSyntheticsFrameBuilderDIA

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pub fn new( path: &Path, with_annotations: bool, num_threads: usize, @@ -19,7 +19,7 @@ mz_noise_fragment: bool, fragment_noise_ppm: f64, right_drag: bool, -) -> TimsFrame

Build a frame for DIA synthetic experiment

+) -> TimsFrame

Build a frame for DIA synthetic experiment

§Arguments
  • frame_id - The frame id
    • @@ -37,7 +37,7 @@
    §Returns
    mz_noise_fragment: bool, fragment_noise_ppm: f64, right_drag: bool, -) -> TimsFrameAnnotated

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pub fn get_fragment_ion_ids(&self, precursor_frame_ids: Vec<u32>) -> Vec<u32>

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pub fn build_frames( +) -> TimsFrameAnnotated

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pub fn get_fragment_ion_ids(&self, precursor_frame_ids: Vec<u32>) -> Vec<u32>

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pub fn build_frames( &self, frame_ids: Vec<u32>, fragmentation: bool, @@ -48,7 +48,7 @@

§Returns
fragment_noise_ppm: f64, right_drag: bool, num_threads: usize, -) -> Vec<TimsFrame>

source

pub fn build_frames_annotated( +) -> Vec<TimsFrame>

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pub fn build_frames_annotated( &self, frame_ids: Vec<u32>, fragmentation: bool, @@ -59,10 +59,10 @@

§Returns
fragment_noise_ppm: f64, right_drag: bool, num_threads: usize, -) -> Vec<TimsFrameAnnotated>
source

pub fn build_fragment_frame_annotated( +) -> Vec<TimsFrameAnnotated>

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pub fn build_fragment_frame_annotated( &self, frame_id: u32, - fragment_ions: &BTreeMap<(u32, i8, i8), (PeptideProductIonSeriesCollection, Vec<MzSpectrumAnnotated>)>, + fragment_ions: &BTreeMap<(u32, i8, i8), (PeptideProductIonSeriesCollection, Vec<MzSpectrumAnnotated>)>, mz_noise_fragment: bool, uniform: bool, fragment_ppm: f64, @@ -70,7 +70,7 @@

§Returns
mz_max: Option<f64>, intensity_min: Option<f64>, right_drag: Option<bool>, -) -> TimsFrameAnnotated
source

pub fn get_ion_transmission_matrix( +) -> TimsFrameAnnotated

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pub fn get_ion_transmission_matrix( &self, peptide_id: u32, charge: i8, @@ -84,7 +84,7 @@

§Returns
peptide_ids: Vec<u32>, charge: Vec<i8>, num_threads: usize, -) -> Vec<(usize, usize)>

Trait Implementations§

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impl TimsTofCollisionEnergy for TimsTofSyntheticsFrameBuilderDIA

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fn get_collision_energy(&self, frame_id: i32, scan_id: i32) -> f64

Auto Trait Implementations§

Blanket Implementations§

source§

impl<T> Any for T
where +) -> Vec<(usize, usize)>

Trait Implementations§

Auto Trait Implementations§

Blanket Implementations§

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impl<T> Any for T
where T: 'static + ?Sized,

source§

fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more
source§

impl<T> Borrow<T> for T
where T: ?Sized,

source§

fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more
source§

impl<T> BorrowMut<T> for T
where T: ?Sized,

source§

fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more
source§

impl<T> From<T> for T

source§

fn from(t: T) -> T

Returns the argument unchanged.

diff --git a/main/rustdf/sim/handle/struct.TimsTofSyntheticsDataHandle.html b/main/rustdf/sim/handle/struct.TimsTofSyntheticsDataHandle.html index f408412e..bac2f038 100644 --- a/main/rustdf/sim/handle/struct.TimsTofSyntheticsDataHandle.html +++ b/main/rustdf/sim/handle/struct.TimsTofSyntheticsDataHandle.html @@ -1,6 +1,6 @@ TimsTofSyntheticsDataHandle in rustdf::sim::handle - Rust
rustdf::sim::handle

Struct TimsTofSyntheticsDataHandle

source 
pub struct TimsTofSyntheticsDataHandle {
     pub connection: Connection,
-}

Fields§

§connection: Connection

Implementations§

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impl TimsTofSyntheticsDataHandle

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pub fn new(path: &Path) -> Result<Self>

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pub fn read_frames(&self) -> Result<Vec<FramesSim>>

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pub fn read_scans(&self) -> Result<Vec<ScansSim>>

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pub fn read_peptides(&self) -> Result<Vec<PeptidesSim>>

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pub fn read_ions(&self) -> Result<Vec<IonSim>>

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pub fn read_window_group_settings(&self) -> Result<Vec<WindowGroupSettingsSim>>

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pub fn read_frame_to_window_group(&self) -> Result<Vec<FrameToWindowGroupSim>>

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pub fn read_fragment_ions(&self) -> Result<Vec<FragmentIonSim>>

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pub fn get_transmission_dia(&self) -> TimsTransmissionDIA

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pub fn get_collision_energy_dia(&self) -> TimsTofCollisionEnergyDIA

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pub fn get_transmitted_ions( +}

Fields§

§connection: Connection

Implementations§

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impl TimsTofSyntheticsDataHandle

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pub fn new(path: &Path) -> Result<Self>

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pub fn read_frames(&self) -> Result<Vec<FramesSim>>

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pub fn read_scans(&self) -> Result<Vec<ScansSim>>

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pub fn read_peptides(&self) -> Result<Vec<PeptidesSim>>

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pub fn read_ions(&self) -> Result<Vec<IonSim>>

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pub fn read_window_group_settings(&self) -> Result<Vec<WindowGroupSettingsSim>>

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pub fn read_frame_to_window_group(&self) -> Result<Vec<FrameToWindowGroupSim>>

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pub fn read_fragment_ions(&self) -> Result<Vec<FragmentIonSim>>

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pub fn get_transmission_dia(&self) -> TimsTransmissionDIA

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pub fn get_collision_energy_dia(&self) -> TimsTofCollisionEnergyDIA

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pub fn get_transmitted_ions( &self, num_threads: usize, ) -> (Vec<i32>, Vec<i32>, Vec<String>, Vec<i8>, Vec<f32>)

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pub fn build_peptide_to_ion_map( @@ -16,15 +16,15 @@ peptides: &Vec<PeptidesSim>, ) -> BTreeMap<u32, (Vec<u32>, Vec<f32>)>

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pub fn build_peptide_to_ions( ions: &Vec<IonSim>, -) -> BTreeMap<u32, (Vec<f32>, Vec<Vec<u32>>, Vec<Vec<f32>>, Vec<i8>, Vec<MzSpectrum>)>

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pub fn build_fragment_ions( +) -> BTreeMap<u32, (Vec<f32>, Vec<Vec<u32>>, Vec<Vec<f32>>, Vec<i8>, Vec<MzSpectrum>)>

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pub fn build_fragment_ions( peptides_sim: &BTreeMap<u32, PeptidesSim>, fragment_ions: &Vec<FragmentIonSim>, num_threads: usize, -) -> BTreeMap<(u32, i8, i8), (PeptideProductIonSeriesCollection, Vec<MzSpectrum>)>

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pub fn build_fragment_ions_annotated( +) -> BTreeMap<(u32, i8, i8), (PeptideProductIonSeriesCollection, Vec<MzSpectrum>)>

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pub fn build_fragment_ions_annotated( peptides_sim: &BTreeMap<u32, PeptidesSim>, fragment_ions: &Vec<FragmentIonSim>, num_threads: usize, -) -> BTreeMap<(u32, i8, i8), (PeptideProductIonSeriesCollection, Vec<MzSpectrumAnnotated>)>

Trait Implementations§

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impl Debug for TimsTofSyntheticsDataHandle

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

Auto Trait Implementations§

Blanket Implementations§

Trait Implementations§

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impl Debug for TimsTofSyntheticsDataHandle

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

Auto Trait Implementations§

Blanket Implementations§

source§

impl<T> Any for T
where T: 'static + ?Sized,

source§

fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more
source§

impl<T> Borrow<T> for T
where T: ?Sized,

source§

fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more
source§

impl<T> BorrowMut<T> for T
where T: ?Sized,

source§

fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more
source§

impl<T> From<T> for T

source§

fn from(t: T) -> T

Returns the argument unchanged.

diff --git a/main/rustdf/sim/precursor/struct.TimsTofSyntheticsPrecursorFrameBuilder.html b/main/rustdf/sim/precursor/struct.TimsTofSyntheticsPrecursorFrameBuilder.html index 2fdea1e3..4bbcdd99 100644 --- a/main/rustdf/sim/precursor/struct.TimsTofSyntheticsPrecursorFrameBuilder.html +++ b/main/rustdf/sim/precursor/struct.TimsTofSyntheticsPrecursorFrameBuilder.html @@ -5,11 +5,11 @@ pub frames: Vec<FramesSim>, pub precursor_frame_id_set: HashSet<u32>, pub frame_to_abundances: BTreeMap<u32, (Vec<u32>, Vec<f32>)>, - pub peptide_to_ions: BTreeMap<u32, (Vec<f32>, Vec<Vec<u32>>, Vec<Vec<f32>>, Vec<i8>, Vec<MzSpectrum>)>, + pub peptide_to_ions: BTreeMap<u32, (Vec<f32>, Vec<Vec<u32>>, Vec<Vec<f32>>, Vec<i8>, Vec<MzSpectrum>)>, pub frame_to_rt: BTreeMap<u32, f32>, pub scan_to_mobility: BTreeMap<u32, f32>, pub peptide_to_events: BTreeMap<u32, f32>, -}

Fields§

§ions: BTreeMap<u32, Vec<IonSim>>§peptides: BTreeMap<u32, PeptidesSim>§scans: Vec<ScansSim>§frames: Vec<FramesSim>§precursor_frame_id_set: HashSet<u32>§frame_to_abundances: BTreeMap<u32, (Vec<u32>, Vec<f32>)>§peptide_to_ions: BTreeMap<u32, (Vec<f32>, Vec<Vec<u32>>, Vec<Vec<f32>>, Vec<i8>, Vec<MzSpectrum>)>§frame_to_rt: BTreeMap<u32, f32>§scan_to_mobility: BTreeMap<u32, f32>§peptide_to_events: BTreeMap<u32, f32>

Implementations§

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impl TimsTofSyntheticsPrecursorFrameBuilder

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pub fn new(path: &Path) -> Result<Self>

Create a new instance of TimsTofSynthetics

+}

Fields§

§ions: BTreeMap<u32, Vec<IonSim>>§peptides: BTreeMap<u32, PeptidesSim>§scans: Vec<ScansSim>§frames: Vec<FramesSim>§precursor_frame_id_set: HashSet<u32>§frame_to_abundances: BTreeMap<u32, (Vec<u32>, Vec<f32>)>§peptide_to_ions: BTreeMap<u32, (Vec<f32>, Vec<Vec<u32>>, Vec<Vec<f32>>, Vec<i8>, Vec<MzSpectrum>)>§frame_to_rt: BTreeMap<u32, f32>§scan_to_mobility: BTreeMap<u32, f32>§peptide_to_events: BTreeMap<u32, f32>

Implementations§

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impl TimsTofSyntheticsPrecursorFrameBuilder

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pub fn new(path: &Path) -> Result<Self>

Create a new instance of TimsTofSynthetics

§Arguments
  • path - A reference to a Path
    • @@ -25,7 +25,7 @@
    §Returns
    uniform: bool, precursor_noise_ppm: f64, right_drag: bool, -) -> TimsFrame

Build a precursor frame

+) -> TimsFrame

Build a precursor frame

§Arguments

Auto Trait Implementations§

Blanket Implementations§

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impl<T> Any for T
where +) -> Vec<TimsFrameAnnotated>

Auto Trait Implementations§

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impl<T> Any for T
where T: 'static + ?Sized,

source§

fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more
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impl<T> Borrow<T> for T
where T: ?Sized,

source§

fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more
source§

impl<T> BorrowMut<T> for T
where T: ?Sized,

source§

fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more
source§

impl<T> From<T> for T

source§

fn from(t: T) -> T

Returns the argument unchanged.

diff --git a/main/settings.html b/main/settings.html index 7981a4a3..5a32b92b 100644 --- a/main/settings.html +++ b/main/settings.html @@ -1 +1 @@ -Settings

Rustdoc settings

Back
\ No newline at end of file +Settings

Rustdoc settings

Back
\ No newline at end of file diff --git a/main/trait.impl/mscore/timstof/collision/trait.TimsTofCollisionEnergy.js b/main/trait.impl/mscore/timstof/collision/trait.TimsTofCollisionEnergy.js index 1808fe0f..d307dc54 100644 --- a/main/trait.impl/mscore/timstof/collision/trait.TimsTofCollisionEnergy.js +++ b/main/trait.impl/mscore/timstof/collision/trait.TimsTofCollisionEnergy.js @@ -1,9 +1,9 @@ (function() { - var implementors = Object.fromEntries([["mscore",[]],["rustdf",[["impl TimsTofCollisionEnergy for TimsTofSyntheticsFrameBuilderDIA"]]]]); + var implementors = Object.fromEntries([["mscore",[]],["rustdf",[["impl TimsTofCollisionEnergy for TimsTofSyntheticsFrameBuilderDIA"]]]]); if (window.register_implementors) { window.register_implementors(implementors); } else { window.pending_implementors = implementors; } })() -//{"start":57,"fragment_lengths":[13,243]} \ No newline at end of file +//{"start":57,"fragment_lengths":[13,401]} \ No newline at end of file