Here are command line arguments you could specify for transmart batch upload.
| Argument | Description | Example |
|---|---|---|
| -d | overrides/supplements params file parameter | -d STUDY_ID=GSE8581 |
| -p | specify params file | -p studies/GSE8581/clinical.params |
| -f | specify folder with params files on any depth | -f studies/GSE8581/ |
| -c | location of database configuration properties file | -f batchdb.properties |
| -j | the id or name of a job instance | |
| -r | restart the last failed execution | |
| -s | stop a running execution | |
| -a | abandon a stopped execution | |
| -n | start the job despite it was run before |