From e130857afba2af5d3056729d1723d3fb282413c6 Mon Sep 17 00:00:00 2001 From: Alex Wolf Date: Thu, 1 Apr 2021 11:10:20 +0200 Subject: [PATCH] update readme --- README.rst | 13 +++++-------- 1 file changed, 5 insertions(+), 8 deletions(-) diff --git a/README.rst b/README.rst index 0dc81a7..862f047 100644 --- a/README.rst +++ b/README.rst @@ -1,12 +1,10 @@ Intercode - Interpretable Autoencoder -====================================== +===================================== -Intercode is a package to learn interpretable latent representation of single-cell data. -Intercode contains the implementation of the autoencoder which forces latent dimensions -to correspond to predefined gene sets. +Intercode learns interpretable representations of scRNA-seq by regularizing a latent autoencoder space with knowledge encoded in gene sets. Usage and installation --------------------------------------- +---------------------- Intercode requires pytorch, numpy and anndata. Install with pip @@ -15,6 +13,5 @@ Install with pip pip install intercode -See `the notebooks `_ for the examples. - -Read `the preprint `_ for description. +* See `the tutorials `__ for the examples. +* Read `the preprint `__.