From da1f4848324c2aec596dc3a2a8acc8c3911266e9 Mon Sep 17 00:00:00 2001 From: Thomas Lin Pedersen Date: Mon, 26 Feb 2024 09:17:09 +0100 Subject: [PATCH] Fix links --- R/layout_fabric.R | 2 +- R/layout_hive.R | 2 +- README.Rmd | 2 +- README.md | 2 +- man/layout_tbl_graph_fabric.Rd | 2 +- man/layout_tbl_graph_hive.Rd | 2 +- 6 files changed, 6 insertions(+), 6 deletions(-) diff --git a/R/layout_fabric.R b/R/layout_fabric.R index c29d2170..e2a984c1 100644 --- a/R/layout_fabric.R +++ b/R/layout_fabric.R @@ -33,7 +33,7 @@ #' @importFrom rlang enquo eval_tidy #' #' @references -#' BioFabric website: +#' BioFabric website: #' #' Longabaugh, William J.R. (2012). #' *Combing the hairball with BioFabric: a new approach for visualization of large networks*. diff --git a/R/layout_hive.R b/R/layout_hive.R index e5476cc3..b4567fe3 100644 --- a/R/layout_hive.R +++ b/R/layout_hive.R @@ -66,7 +66,7 @@ #' plots-rational approach to visualizing networks*. Brief Bioinform 13 (5): #' 627-644. https://doi.org/10.1093/bib/bbr069 #' -#' +#' #' #' @family layout_tbl_graph_* #' diff --git a/README.Rmd b/README.Rmd index 6a2d8c13..8fa0c853 100644 --- a/README.Rmd +++ b/README.Rmd @@ -100,7 +100,7 @@ data in `ggplot2`, though I'm fairly certain that it is the most ambitious. [`ggdendro`](https://CRAN.R-project.org/package=ggdendro) provides support for `dendrogram` and `hclust` objects through conversion of the structures into line segments that can then be plotted with `geom_segment()`. -[`ggtree`](http://bioconductor.org/packages/ggtree/) provides more extensive +[`ggtree`](https://bioconductor.org/packages/ggtree/) provides more extensive support for all things tree-related, though it lacks some of the layouts and edge types that `ggraph` offers (it has other features that `ggraph` lacks though). For more standard *hairball* network plots diff --git a/README.md b/README.md index 8bc0b93a..6f696355 100644 --- a/README.md +++ b/README.md @@ -114,7 +114,7 @@ most ambitious. [`ggdendro`](https://CRAN.R-project.org/package=ggdendro) provides support for `dendrogram` and `hclust` objects through conversion of the structures into line segments that can then be plotted with -`geom_segment()`. [`ggtree`](http://bioconductor.org/packages/ggtree/) +`geom_segment()`. [`ggtree`](https://bioconductor.org/packages/ggtree/) provides more extensive support for all things tree-related, though it lacks some of the layouts and edge types that `ggraph` offers (it has other features that `ggraph` lacks though). For more standard *hairball* diff --git a/man/layout_tbl_graph_fabric.Rd b/man/layout_tbl_graph_fabric.Rd index 8503b828..25bacfa6 100644 --- a/man/layout_tbl_graph_fabric.Rd +++ b/man/layout_tbl_graph_fabric.Rd @@ -45,7 +45,7 @@ something that should be handled with care - e.g. by only zooming in on a specific region. } \references{ -BioFabric website: \url{http://www.biofabric.org} +BioFabric website: \url{https://biofabric.systemsbiology.net} Longabaugh, William J.R. (2012). \emph{Combing the hairball with BioFabric: a new approach for visualization of large networks}. diff --git a/man/layout_tbl_graph_hive.Rd b/man/layout_tbl_graph_hive.Rd index bcf04de8..8b6a6b98 100644 --- a/man/layout_tbl_graph_hive.Rd +++ b/man/layout_tbl_graph_hive.Rd @@ -90,7 +90,7 @@ Krzywinski, M., Birol, I., Jones, SJM., and Marra, MA. (2012). \emph{Hive plots-rational approach to visualizing networks}. Brief Bioinform 13 (5): 627-644. https://doi.org/10.1093/bib/bbr069 -\url{http://www.hiveplot.net} +\url{https://www.hiveplot.net/} } \seealso{ Other layout_tbl_graph_*: