-
Notifications
You must be signed in to change notification settings - Fork 47
262 lines (221 loc) · 9.3 KB
/
deploy.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
name: Deploy
on:
push:
paths-ignore:
- "README.md"
- "**/docs/**"
- ".github/workflows/docs.yml"
pull_request:
branches:
- master
schedule:
- cron: "0 11 * * *"
jobs:
publish-pypi:
name: Publish to PyPi
if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags')
runs-on: ubuntu-latest
permissions:
# IMPORTANT: this permission is mandatory for trusted publishing
id-token: write
steps:
- name: Checkout source
uses: actions/checkout@v4
- name: Set up Python 3.9
uses: actions/setup-python@v5
with:
python-version: 3.9
- name: Build package
run: |
pip install wheel setuptools -U
python setup.py sdist
- name: Publish
uses: pypa/gh-action-pypi-publish@release/v1
with:
skip-existing: true
test-publish-pypi:
name: Build & verify PyPi
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: 3.9
- name: Install twine
run: |
python -m pip install twine
- name: Build package
run: |
pip install wheel setuptools -U
python setup.py sdist
- name: List result
run: |
ls -lh dist
- name: Check long_description
run: |
python -m twine check dist/*
build-conda:
name: Build in Conda
if: startsWith(github.event.ref, 'refs/tags') == false
runs-on: ${{ matrix.os }}
defaults:
run:
shell: bash -l {0}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest, macos-latest, macos-13]
python-version: [3.9]
include:
- environment: ci/environment.yml
- environment: ci/environment_noxspec.yml
os: macos-latest
steps:
- name: Checkout
uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Add conda ${{ matrix.python-version }} to system path
uses: conda-incubator/setup-miniconda@v3
with:
activate-environment: "test_env"
auto-activate-base: false
miniforge-variant: Miniforge3
python-version: ${{ matrix.python-version }}
auto-update-conda: true
environment-file: ${{ matrix.environment }}
use-only-tar-bz2: true
channel-priority: true
channels: conda-forge, xspecmodels, threeml
- name: Init Env
shell: bash -l {0}
run: |
# Make sure we fail in case of error
if [[ ${{matrix.os}} == ubuntu-latest ]];
then
miniconda_os=Linux
compilers="gcc_linux-64 gxx_linux-64 gfortran_linux-64"
else
miniconda_os=MacOSX
compilers="clang_osx-64 clangxx_osx-64 gfortran_osx-64"
# On macOS we also need the conda libx11 libraries used to build xspec
# We also need to pin down ncurses, for now only on macos.
xorg="xorg-libx11"
fi
export PKG_VERSION=$(python -c "import versioneer;print(versioneer.get_version())")
echo "PKG_VERSION=$PKG_VERSION" >> $GITHUB_ENV
echo "HOME= ${HOME}"
echo "Conda installation path ${CONDA}"
echo "Building ${PKG_VERSION}"
#echo "Python version: ${{matrix.python-version}}"
conda install codecov pytest-cov
- name: Conda list
shell: bash -l {0}
run: |
conda list
- name: Build the Distribution
shell: bash -l {0}
run: |
# Build package
#conda install conda-build -n base
mamba install -c conda-forge boa
#conda build --python=${{matrix.python-version}} conda-dist/recipe
conda mambabuild --python=${{matrix.python-version}} conda-dist/recipe
#conda install --use-local astromodels
conda install -c ${CONDA}/envs/test_env/conda-bld/ astromodels
- name: Test import xspec
if: matrix.os != 'macos-latest'
shell: bash -l {0}
run: |
cd astromodels/tests
python -c "import astromodels.xspec"
- name: Test astromodels
shell: bash -l {0}
run: python -m pytest -vv --cov=astromodels --cov-report=xml
env:
OMP_NUM_THREADS: 1
MKL_NUM_THREADS: 1
NUMEXPR_NUM_THREADS: 1
MPLBACKEND: "Agg"
publish-conda:
name: Publish to Conda
if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags')
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-latest, macos-latest, macos-13]
python-version: [3.9]
include:
- environment: ci/environment.yml
- environment: ci/environment_noxspec.yml
os: macos-latest
steps:
- name: Checkout
uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Add conda ${{ matrix.python-version }} to system path
uses: conda-incubator/setup-miniconda@v3
with:
activate-environment: "test_env"
auto-activate-base: false
#architecture: "x64"
miniforge-variant: Miniforge3
#miniforge-version: latest
python-version: ${{ matrix.python-version }}
auto-update-conda: true
environment-file: ${{ matrix.environment }}
use-only-tar-bz2: true
channel-priority: true
channels: conda-forge, xspecmodels, threeml
- name: Init Env
shell: bash -l {0}
run: |
# Make sure we fail in case of error
if [[ ${{matrix.os}} == ubuntu-latest ]];
then
miniconda_os=Linux
compilers="gcc_linux-64 gxx_linux-64 gfortran_linux-64"
else # osx
miniconda_os=MacOSX
compilers="clang_osx-64 clangxx_osx-64 gfortran_osx-64"
# On macOS we also need the conda libx11 libraries used to build xspec
# We also need to pin down ncurses, for now only on macos.
xorg="xorg-libx11"
fi
export PKG_VERSION=$(python -c "import versioneer;print(versioneer.get_version())")
echo "PKG_VERSION=$PKG_VERSION" >> $GITHUB_ENV
echo "HOME= ${HOME}"
echo "Conda installation path ${CONDA}"
echo "Building ${PKG_VERSION}"
- name: Build the Distribution
shell: bash -l {0}
run: |
# Build package
#conda install conda-build -n base
mamba install -c conda-forge boa
#conda build --python=${{matrix.python-version}} conda-dist/recipe
conda mambabuild --python=${{matrix.python-version}} conda-dist/recipe
#conda install --use-local astromodels
conda install -c ${CONDA}/envs/test_env/conda-bld/ astromodels
- name: Publish to Conda
shell: bash -l {0}
run: |
conda install -c conda-forge anaconda-client
echo "Uploading ${{matrix.os}} IsDev: ${ISDEV} "
if [[ "${ISDEV}" == "true" ]]; then
LABEL="--label dev"
fi
if [[ ${{matrix.os}} == ubuntu-latest ]];
then
anaconda -v --show-traceback -t $UPLOAD_TOKEN upload -u threeml ${CONDA}/envs/test_env/conda-bld/linux-64/*.tar.bz2 --force $LABEL
elif [[ ${{matrix.os}} == macos-latest ]];
then
anaconda -v --show-traceback -t $UPLOAD_TOKEN upload -u threeml ${CONDA}/envs/test_env/conda-bld/osx-arm64/*.tar.bz2 --force $LABEL
else
anaconda -v --show-traceback -t $UPLOAD_TOKEN upload -u threeml ${CONDA}/envs/test_env/conda-bld/osx-64/*.tar.bz2 --force $LABEL
fi
env:
UPLOAD_TOKEN: ${{secrets.CONDA_UPLOAD_TOKEN}}
CURRENT_OS: ${{matrix.os}}
ISDEV: ${{contains(github.ref, 'dev')}}