Site built with pkgdown 2.0.7.
+Site built with pkgdown 2.0.8.
diff --git a/CONTRIBUTING.html b/CONTRIBUTING.html index 5f4a8b6..5a991b3 100644 --- a/CONTRIBUTING.html +++ b/CONTRIBUTING.html @@ -1,5 +1,5 @@ -vignettes/an-introduction.Rmd
an-introduction.Rmd## R version 4.3.2 (2023-10-31)
+## R version 4.3.3 (2024-02-29)
## Platform: x86_64-pc-linux-gnu (64-bit)
-## Running under: Ubuntu 22.04.3 LTS
+## Running under: Ubuntu 22.04.4 LTS
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
@@ -851,49 +851,50 @@ Appendix## [8] base
##
## other attached packages:
-## [1] ggplot2_3.5.0 plyranges_1.23.1 GenomicRanges_1.54.1
+## [1] ggplot2_3.5.0 plyranges_1.23.2 GenomicRanges_1.54.1
## [4] GenomeInfoDb_1.38.8 IRanges_2.36.0 S4Vectors_0.40.2
## [7] BiocGenerics_0.48.1 BiocStyle_2.30.0
##
## loaded via a namespace (and not attached):
## [1] SummarizedExperiment_1.32.0 gtable_0.3.4
## [3] rjson_0.2.21 xfun_0.43
-## [5] bslib_0.7.0 Biobase_2.62.0
-## [7] lattice_0.22-6 vctrs_0.6.5
-## [9] tools_4.3.2 bitops_1.0-7
-## [11] generics_0.1.3 parallel_4.3.2
-## [13] tibble_3.2.1 fansi_1.0.6
-## [15] highr_0.10 pkgconfig_2.0.3
-## [17] Matrix_1.6-5 desc_1.4.3
-## [19] lifecycle_1.0.4 GenomeInfoDbData_1.2.11
-## [21] farver_2.1.1 compiler_4.3.2
-## [23] Rsamtools_2.18.0 textshaping_0.3.7
-## [25] Biostrings_2.70.3 munsell_0.5.1
-## [27] codetools_0.2-20 htmltools_0.5.8.1
-## [29] sass_0.4.9 RCurl_1.98-1.14
-## [31] yaml_2.3.8 pkgdown_2.0.7
-## [33] pillar_1.9.0 crayon_1.5.2
-## [35] jquerylib_0.1.4 BiocParallel_1.36.0
-## [37] DelayedArray_0.28.0 cachem_1.0.8
-## [39] abind_1.4-5 tidyselect_1.2.1
-## [41] digest_0.6.35 restfulr_0.0.15
-## [43] dplyr_1.1.4 purrr_1.0.2
-## [45] bookdown_0.38 labeling_0.4.3
-## [47] fastmap_1.1.1 grid_4.3.2
-## [49] colorspace_2.1-0 cli_3.6.2
-## [51] SparseArray_1.2.4 magrittr_2.0.3
-## [53] S4Arrays_1.2.1 XML_3.99-0.16.1
-## [55] utf8_1.2.4 withr_3.0.0
-## [57] scales_1.3.0 rmarkdown_2.26
-## [59] XVector_0.42.0 matrixStats_1.2.0
-## [61] ragg_1.3.0 memoise_2.0.1
-## [63] evaluate_0.23 knitr_1.46
-## [65] BiocIO_1.12.0 rtracklayer_1.62.0
-## [67] rlang_1.1.3 glue_1.7.0
-## [69] BiocManager_1.30.22 jsonlite_1.8.8
-## [71] R6_2.5.1 MatrixGenerics_1.14.0
-## [73] GenomicAlignments_1.38.2 systemfonts_1.0.6
-## [75] fs_1.6.3 zlibbioc_1.48.2
+## [5] bslib_0.7.0 htmlwidgets_1.6.4
+## [7] Biobase_2.62.0 lattice_0.22-6
+## [9] vctrs_0.6.5 tools_4.3.3
+## [11] bitops_1.0-7 generics_0.1.3
+## [13] parallel_4.3.3 tibble_3.2.1
+## [15] fansi_1.0.6 highr_0.10
+## [17] pkgconfig_2.0.3 Matrix_1.6-5
+## [19] desc_1.4.3 lifecycle_1.0.4
+## [21] GenomeInfoDbData_1.2.11 farver_2.1.1
+## [23] compiler_4.3.3 Rsamtools_2.18.0
+## [25] textshaping_0.3.7 Biostrings_2.70.3
+## [27] munsell_0.5.1 codetools_0.2-20
+## [29] htmltools_0.5.8.1 sass_0.4.9
+## [31] RCurl_1.98-1.14 yaml_2.3.8
+## [33] pkgdown_2.0.8 pillar_1.9.0
+## [35] crayon_1.5.2 jquerylib_0.1.4
+## [37] BiocParallel_1.36.0 DelayedArray_0.28.0
+## [39] cachem_1.0.8 abind_1.4-5
+## [41] tidyselect_1.2.1 digest_0.6.35
+## [43] restfulr_0.0.15 dplyr_1.1.4
+## [45] purrr_1.0.2 bookdown_0.38
+## [47] labeling_0.4.3 fastmap_1.1.1
+## [49] grid_4.3.3 colorspace_2.1-0
+## [51] cli_3.6.2 SparseArray_1.2.4
+## [53] magrittr_2.0.3 S4Arrays_1.2.1
+## [55] XML_3.99-0.16.1 utf8_1.2.4
+## [57] withr_3.0.0 scales_1.3.0
+## [59] rmarkdown_2.26 XVector_0.42.0
+## [61] matrixStats_1.2.0 ragg_1.3.0
+## [63] memoise_2.0.1 evaluate_0.23
+## [65] knitr_1.46 BiocIO_1.12.0
+## [67] rtracklayer_1.62.0 rlang_1.1.3
+## [69] glue_1.7.0 BiocManager_1.30.22
+## [71] jsonlite_1.8.8 R6_2.5.1
+## [73] MatrixGenerics_1.14.0 GenomicAlignments_1.38.2
+## [75] systemfonts_1.0.6 fs_1.6.3
+## [77] zlibbioc_1.48.2Site built with pkgdown 2.0.7.
+Site built with pkgdown 2.0.8.
diff --git a/articles/index.html b/articles/index.html index 9984e2a..334569f 100644 --- a/articles/index.html +++ b/articles/index.html @@ -1,5 +1,5 @@ -Site built with pkgdown 2.0.7.
+Site built with pkgdown 2.0.8.
diff --git a/reference/io-bam-read.html b/reference/io-bam-read.html index 0e4b83d..979263c 100644 --- a/reference/io-bam-read.html +++ b/reference/io-bam-read.html @@ -1,5 +1,5 @@ -