From c3d74755d05b70df4636504dc398ef56af6b9b24 Mon Sep 17 00:00:00 2001 From: GitHub Actions Date: Thu, 11 Apr 2024 22:39:22 +0000 Subject: [PATCH] cli-154-947 --- 404.html | 6 +- CODE_OF_CONDUCT.html | 6 +- CONTRIBUTING.html | 6 +- articles/an-introduction.html | 87 ++++++++++++++------------- articles/index.html | 6 +- authors.html | 8 +-- index.html | 11 ++-- news/index.html | 6 +- pkgdown.yml | 4 +- reference/add-nearest-distance.html | 6 +- reference/as_ranges.html | 6 +- reference/compute_coverage.html | 6 +- reference/element-setops.html | 6 +- reference/filter-ranges.html | 6 +- reference/group_by-ranges.html | 6 +- reference/index.html | 6 +- reference/io-bam-read.html | 6 +- reference/io-bed-read.html | 6 +- reference/io-bed-write.html | 6 +- reference/io-bigwig-read.html | 6 +- reference/io-bigwig-write.html | 6 +- reference/io-gff-read.html | 6 +- reference/io-gff-write.html | 6 +- reference/io-wig-read.html | 6 +- reference/io-wig-write.html | 6 +- reference/mutate-ranges.html | 6 +- reference/n.html | 6 +- reference/n_distinct.html | 6 +- reference/overlap-joins.html | 6 +- reference/overscope_ranges.html | 6 +- reference/plyranges-package.html | 6 +- reference/ranges-anchor.html | 6 +- reference/ranges-arrange.html | 6 +- reference/ranges-bind.html | 6 +- reference/ranges-chop.html | 6 +- reference/ranges-class.html | 6 +- reference/ranges-construct.html | 6 +- reference/ranges-count-overlaps.html | 6 +- reference/ranges-deferred.html | 6 +- reference/ranges-disjoin.html | 6 +- reference/ranges-expand.html | 6 +- reference/ranges-filter-overlaps.html | 6 +- reference/ranges-flank.html | 6 +- reference/ranges-follow.html | 6 +- reference/ranges-info.html | 6 +- reference/ranges-interweave.html | 6 +- reference/ranges-names.html | 6 +- reference/ranges-nearest.html | 6 +- reference/ranges-overlaps-self.html | 6 +- reference/ranges-overlaps.html | 6 +- reference/ranges-pairs.html | 6 +- reference/ranges-precede.html | 6 +- reference/ranges-reduce.html | 6 +- reference/ranges-select.html | 6 +- reference/ranges-setops.html | 6 +- reference/ranges-setters.html | 6 +- reference/ranges-shift.html | 6 +- reference/ranges-summarise.html | 6 +- reference/ranges-tile.html | 6 +- reference/slice-ranges.html | 6 +- reference/stretch.html | 6 +- reference/tidyverse-reexports.html | 6 +- 62 files changed, 228 insertions(+), 230 deletions(-) diff --git a/404.html b/404.html index b9b18d6..9400828 100644 --- a/404.html +++ b/404.html @@ -12,7 +12,7 @@ - + @@ -39,7 +39,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -107,7 +107,7 @@

Page not found (404)

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html index 4a8cce7..531a0cd 100644 --- a/CODE_OF_CONDUCT.html +++ b/CODE_OF_CONDUCT.html @@ -1,5 +1,5 @@ -Contributor Covenant Code of Conduct • plyrangesContributor Covenant Code of Conduct • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -139,7 +139,7 @@

Attribution -

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/CONTRIBUTING.html b/CONTRIBUTING.html index 5f4a8b6..5a991b3 100644 --- a/CONTRIBUTING.html +++ b/CONTRIBUTING.html @@ -1,5 +1,5 @@ -Contributing to plyranges • plyrangesContributing to plyranges • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -102,7 +102,7 @@

Code of Conduct
-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/articles/an-introduction.html b/articles/an-introduction.html index c9b7eed..04cee7f 100644 --- a/articles/an-introduction.html +++ b/articles/an-introduction.html @@ -12,7 +12,7 @@ - + @@ -40,7 +40,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -88,7 +88,7 @@

Getting started with the plyranges package

Stuart Lee

-

2024-04-10

+

2024-04-11

Source: vignettes/an-introduction.Rmd @@ -827,9 +827,9 @@

Appendix -
## R version 4.3.2 (2023-10-31)
+
## R version 4.3.3 (2024-02-29)
 ## Platform: x86_64-pc-linux-gnu (64-bit)
-## Running under: Ubuntu 22.04.3 LTS
+## Running under: Ubuntu 22.04.4 LTS
 ## 
 ## Matrix products: default
 ## BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
@@ -851,49 +851,50 @@ 
Appendix## [8] base     
 ## 
 ## other attached packages:
-## [1] ggplot2_3.5.0        plyranges_1.23.1     GenomicRanges_1.54.1
+## [1] ggplot2_3.5.0        plyranges_1.23.2     GenomicRanges_1.54.1
 ## [4] GenomeInfoDb_1.38.8  IRanges_2.36.0       S4Vectors_0.40.2    
 ## [7] BiocGenerics_0.48.1  BiocStyle_2.30.0    
 ## 
 ## loaded via a namespace (and not attached):
 ##  [1] SummarizedExperiment_1.32.0 gtable_0.3.4               
 ##  [3] rjson_0.2.21                xfun_0.43                  
-##  [5] bslib_0.7.0                 Biobase_2.62.0             
-##  [7] lattice_0.22-6              vctrs_0.6.5                
-##  [9] tools_4.3.2                 bitops_1.0-7               
-## [11] generics_0.1.3              parallel_4.3.2             
-## [13] tibble_3.2.1                fansi_1.0.6                
-## [15] highr_0.10                  pkgconfig_2.0.3            
-## [17] Matrix_1.6-5                desc_1.4.3                 
-## [19] lifecycle_1.0.4             GenomeInfoDbData_1.2.11    
-## [21] farver_2.1.1                compiler_4.3.2             
-## [23] Rsamtools_2.18.0            textshaping_0.3.7          
-## [25] Biostrings_2.70.3           munsell_0.5.1              
-## [27] codetools_0.2-20            htmltools_0.5.8.1          
-## [29] sass_0.4.9                  RCurl_1.98-1.14            
-## [31] yaml_2.3.8                  pkgdown_2.0.7              
-## [33] pillar_1.9.0                crayon_1.5.2               
-## [35] jquerylib_0.1.4             BiocParallel_1.36.0        
-## [37] DelayedArray_0.28.0         cachem_1.0.8               
-## [39] abind_1.4-5                 tidyselect_1.2.1           
-## [41] digest_0.6.35               restfulr_0.0.15            
-## [43] dplyr_1.1.4                 purrr_1.0.2                
-## [45] bookdown_0.38               labeling_0.4.3             
-## [47] fastmap_1.1.1               grid_4.3.2                 
-## [49] colorspace_2.1-0            cli_3.6.2                  
-## [51] SparseArray_1.2.4           magrittr_2.0.3             
-## [53] S4Arrays_1.2.1              XML_3.99-0.16.1            
-## [55] utf8_1.2.4                  withr_3.0.0                
-## [57] scales_1.3.0                rmarkdown_2.26             
-## [59] XVector_0.42.0              matrixStats_1.2.0          
-## [61] ragg_1.3.0                  memoise_2.0.1              
-## [63] evaluate_0.23               knitr_1.46                 
-## [65] BiocIO_1.12.0               rtracklayer_1.62.0         
-## [67] rlang_1.1.3                 glue_1.7.0                 
-## [69] BiocManager_1.30.22         jsonlite_1.8.8             
-## [71] R6_2.5.1                    MatrixGenerics_1.14.0      
-## [73] GenomicAlignments_1.38.2    systemfonts_1.0.6          
-## [75] fs_1.6.3                    zlibbioc_1.48.2

+##  [5] bslib_0.7.0                 htmlwidgets_1.6.4          
+##  [7] Biobase_2.62.0              lattice_0.22-6             
+##  [9] vctrs_0.6.5                 tools_4.3.3                
+## [11] bitops_1.0-7                generics_0.1.3             
+## [13] parallel_4.3.3              tibble_3.2.1               
+## [15] fansi_1.0.6                 highr_0.10                 
+## [17] pkgconfig_2.0.3             Matrix_1.6-5               
+## [19] desc_1.4.3                  lifecycle_1.0.4            
+## [21] GenomeInfoDbData_1.2.11     farver_2.1.1               
+## [23] compiler_4.3.3              Rsamtools_2.18.0           
+## [25] textshaping_0.3.7           Biostrings_2.70.3          
+## [27] munsell_0.5.1               codetools_0.2-20           
+## [29] htmltools_0.5.8.1           sass_0.4.9                 
+## [31] RCurl_1.98-1.14             yaml_2.3.8                 
+## [33] pkgdown_2.0.8               pillar_1.9.0               
+## [35] crayon_1.5.2                jquerylib_0.1.4            
+## [37] BiocParallel_1.36.0         DelayedArray_0.28.0        
+## [39] cachem_1.0.8                abind_1.4-5                
+## [41] tidyselect_1.2.1            digest_0.6.35              
+## [43] restfulr_0.0.15             dplyr_1.1.4                
+## [45] purrr_1.0.2                 bookdown_0.38              
+## [47] labeling_0.4.3              fastmap_1.1.1              
+## [49] grid_4.3.3                  colorspace_2.1-0           
+## [51] cli_3.6.2                   SparseArray_1.2.4          
+## [53] magrittr_2.0.3              S4Arrays_1.2.1             
+## [55] XML_3.99-0.16.1             utf8_1.2.4                 
+## [57] withr_3.0.0                 scales_1.3.0               
+## [59] rmarkdown_2.26              XVector_0.42.0             
+## [61] matrixStats_1.2.0           ragg_1.3.0                 
+## [63] memoise_2.0.1               evaluate_0.23              
+## [65] knitr_1.46                  BiocIO_1.12.0              
+## [67] rtracklayer_1.62.0          rlang_1.1.3                
+## [69] glue_1.7.0                  BiocManager_1.30.22        
+## [71] jsonlite_1.8.8              R6_2.5.1                   
+## [73] MatrixGenerics_1.14.0       GenomicAlignments_1.38.2   
+## [75] systemfonts_1.0.6           fs_1.6.3                   
+## [77] zlibbioc_1.48.2
@@ -914,7 +915,7 @@

Appendix

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/articles/index.html b/articles/index.html index 9984e2a..334569f 100644 --- a/articles/index.html +++ b/articles/index.html @@ -1,5 +1,5 @@ -Articles • plyrangesArticles • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -72,7 +72,7 @@

All vignettes

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/authors.html b/authors.html index 2472134..add578a 100644 --- a/authors.html +++ b/authors.html @@ -1,5 +1,5 @@ -Authors and Citation • plyrangesAuthors and Citation • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -54,7 +54,7 @@
-

Authors

+

Authors and Citation

@@ -114,7 +114,7 @@

Citation

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/index.html b/index.html index 87516ec..c4cb1d2 100644 --- a/index.html +++ b/index.html @@ -12,16 +12,13 @@ - + - + Changelog • plyrangesChangelog • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -197,7 +197,7 @@

plyranges 0.9
-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/pkgdown.yml b/pkgdown.yml index 222b903..5e3487a 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -1,7 +1,7 @@ pandoc: 3.1.1 -pkgdown: 2.0.7 +pkgdown: 2.0.8 pkgdown_sha: ~ articles: an-introduction: an-introduction.html -last_built: 2024-04-10T01:46Z +last_built: 2024-04-11T22:38Z diff --git a/reference/add-nearest-distance.html b/reference/add-nearest-distance.html index 1d32366..5437fed 100644 --- a/reference/add-nearest-distance.html +++ b/reference/add-nearest-distance.html @@ -1,5 +1,5 @@ -Add distance to nearest neighbours between two Ranges objects — add_nearest_distance • plyrangesAdd distance to nearest neighbours between two Ranges objects — add_nearest_distance • plyrangesCoerce an Rle or RleList object to Ranges — as_ranges • plyrangesCoerce an Rle or RleList object to Ranges — as_ranges • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -141,7 +141,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/compute_coverage.html b/reference/compute_coverage.html index e103cbc..f572116 100644 --- a/reference/compute_coverage.html +++ b/reference/compute_coverage.html @@ -1,5 +1,5 @@ -Compute coverage over a Ranges object — compute_coverage • plyrangesCompute coverage over a Ranges object — compute_coverage • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -157,7 +157,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/element-setops.html b/reference/element-setops.html index 963394b..1cf19d3 100644 --- a/reference/element-setops.html +++ b/reference/element-setops.html @@ -1,5 +1,5 @@ -Row-wise set operations on Ranges objects — %union% • plyrangesRow-wise set operations on Ranges objects — %union% • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -216,7 +216,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/filter-ranges.html b/reference/filter-ranges.html index e9f9a53..de5cb01 100644 --- a/reference/filter-ranges.html +++ b/reference/filter-ranges.html @@ -1,5 +1,5 @@ -Subset a Ranges object — filter-ranges • plyrangesSubset a Ranges object — filter-ranges • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -193,7 +193,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/group_by-ranges.html b/reference/group_by-ranges.html index fed23f2..752cc21 100644 --- a/reference/group_by-ranges.html +++ b/reference/group_by-ranges.html @@ -1,5 +1,5 @@ -Group a Ranges by one or more variables — GroupedGenomicRanges-class • plyrangesFunction reference • plyrangesFunction reference • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -321,7 +321,7 @@

Utilities -

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/io-bam-read.html b/reference/io-bam-read.html index 0e4b83d..979263c 100644 --- a/reference/io-bam-read.html +++ b/reference/io-bam-read.html @@ -1,5 +1,5 @@ -Read a BAM file — read_bam • plyrangesRead a BAM file — read_bam • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -162,7 +162,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/io-bed-read.html b/reference/io-bed-read.html index b14b88b..4396823 100644 --- a/reference/io-bed-read.html +++ b/reference/io-bed-read.html @@ -1,5 +1,5 @@ -Read a BED or BEDGraph file — read_bed • plyrangesRead a BED or BEDGraph file — read_bed • plyrangesWrite a BED or BEDGraph file — write_bed • plyrangesWrite a BED or BEDGraph file — write_bed • plyrangesRead a BigWig file — read_bigwig • plyrangesRead a BigWig file — read_bigwig • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -130,7 +130,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/io-bigwig-write.html b/reference/io-bigwig-write.html index a86ccf7..b7708ed 100644 --- a/reference/io-bigwig-write.html +++ b/reference/io-bigwig-write.html @@ -1,5 +1,5 @@ -Write a BigWig file — write_bigwig • plyrangesWrite a BigWig file — write_bigwig • plyrangesRead a GFF/GTF/GVT file — read_gff • plyrangesRead a GFF/GTF/GVT file — read_gff • plyrangesWrite a GFF(123) file — write_gff • plyrangesWrite a GFF(123) file — write_gff • plyrangesRead a WIG file — read_wig • plyrangesRead a WIG file — read_wig • plyrangesWrite a WIG file — write_wig • plyrangesWrite a WIG file — write_wig • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -101,7 +101,7 @@

See also

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/mutate-ranges.html b/reference/mutate-ranges.html index 95ccc2b..56f4f89 100644 --- a/reference/mutate-ranges.html +++ b/reference/mutate-ranges.html @@ -1,5 +1,5 @@ -Modify a Ranges object — mutate.Ranges • plyrangesModify a Ranges object — mutate.Ranges • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -276,7 +276,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/n.html b/reference/n.html index 0950f6f..514cb95 100644 --- a/reference/n.html +++ b/reference/n.html @@ -1,5 +1,5 @@ -Compute the number of ranges in each group. — n • plyrangesCompute the number of ranges in each group. — n • plyrangesCompute the number of distinct unique values in a vector or List — n_distinct • plyrangesCompute the number of distinct unique values in a vector or List — n_distinct • plyrangesJoin by overlapping Ranges — join_overlap_intersect • plyrangesJoin by overlapping Ranges — join_overlap_intersect • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -240,7 +240,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/overscope_ranges.html b/reference/overscope_ranges.html index 5ef85a2..060ba0f 100644 --- a/reference/overscope_ranges.html +++ b/reference/overscope_ranges.html @@ -1,5 +1,5 @@ -Create an overscoped environment from a Ranges object — overscope_ranges • plyrangesCreate an overscoped environment from a Ranges object — overscope_ranges • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -103,7 +103,7 @@

See also

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/plyranges-package.html b/reference/plyranges-package.html index 3241d3b..e57e817 100644 --- a/reference/plyranges-package.html +++ b/reference/plyranges-package.html @@ -1,5 +1,5 @@ -plyranges: a grammar of genomic data manipulation — plyranges-package • plyrangesplyranges: a grammar of genomic data manipulation — plyranges-package • plyrangesAnchored Ranges objects — anchor • plyrangesAnchored Ranges objects — anchor • plyrangesSort a Ranges object — arrange.Ranges • plyrangesSort a Ranges object — arrange.Ranges • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -117,7 +117,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/ranges-bind.html b/reference/ranges-bind.html index 8840d18..ac1621f 100644 --- a/reference/ranges-bind.html +++ b/reference/ranges-bind.html @@ -1,5 +1,5 @@ -Combine Ranges by concatentating them together — bind_ranges • plyrangesCombine Ranges by concatentating them together — bind_ranges • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -183,7 +183,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/ranges-chop.html b/reference/ranges-chop.html index a6311e4..82e1081 100644 --- a/reference/ranges-chop.html +++ b/reference/ranges-chop.html @@ -1,5 +1,5 @@ -Group a GRanges object by introns or gaps — chop_by_introns • plyrangesGroup a GRanges object by introns or gaps — chop_by_introns • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -152,7 +152,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/ranges-class.html b/reference/ranges-class.html index 8d33184..ccbd259 100644 --- a/reference/ranges-class.html +++ b/reference/ranges-class.html @@ -1,5 +1,5 @@ -An abstract class to represent operations performed over a file — FileOperator-class • plyrangesAn abstract class to represent operations performed over a file — FileOperator-class • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -83,7 +83,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/ranges-construct.html b/reference/ranges-construct.html index e5aa364..9341f22 100644 --- a/reference/ranges-construct.html +++ b/reference/ranges-construct.html @@ -1,5 +1,5 @@ -Construct a I/GRanges object from a tibble or data.frame — as_iranges • plyrangesConstruct a I/GRanges object from a tibble or data.frame — as_iranges • plyrangesCount the number of overlaps between two Ranges objects — count_overlaps • plyrangesCount the number of overlaps between two Ranges objects — count_overlaps • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -133,7 +133,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/ranges-deferred.html b/reference/ranges-deferred.html index 754e514..28f032a 100644 --- a/reference/ranges-deferred.html +++ b/reference/ranges-deferred.html @@ -1,5 +1,5 @@ -DeferredGenomiRanges objects — DeferredGenomicRanges-class • plyrangesDeferredGenomiRanges objects — DeferredGenomicRanges-class • plyrangesDisjoin then aggregate a Ranges object — disjoin_ranges • plyrangesDisjoin then aggregate a Ranges object — disjoin_ranges • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -155,7 +155,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/ranges-expand.html b/reference/ranges-expand.html index 8023d6c..7a7e778 100644 --- a/reference/ranges-expand.html +++ b/reference/ranges-expand.html @@ -1,5 +1,5 @@ -Expand list-columns in a Ranges object — expand_ranges • plyrangesExpand list-columns in a Ranges object — expand_ranges • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -198,7 +198,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/ranges-filter-overlaps.html b/reference/ranges-filter-overlaps.html index 1070bd2..3ea60cf 100644 --- a/reference/ranges-filter-overlaps.html +++ b/reference/ranges-filter-overlaps.html @@ -1,5 +1,5 @@ -Filter by overlapping/non-overlapping ranges — filter_by_overlaps • plyrangesFilter by overlapping/non-overlapping ranges — filter_by_overlaps • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -190,7 +190,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/ranges-flank.html b/reference/ranges-flank.html index c3a8b5f..593e0f2 100644 --- a/reference/ranges-flank.html +++ b/reference/ranges-flank.html @@ -1,5 +1,5 @@ -Generate flanking regions — flank_left • plyrangesGenerate flanking regions — flank_left • plyrangesFind following Ranges — join_follow • plyrangesFind following Ranges — join_follow • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -170,7 +170,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/ranges-info.html b/reference/ranges-info.html index b361ccb..5b2b2b9 100644 --- a/reference/ranges-info.html +++ b/reference/ranges-info.html @@ -1,5 +1,5 @@ -Construct annotation information — ranges-info • plyrangesConstruct annotation information — ranges-info • plyrangesInterweave a pair of Ranges objects together — interweave • plyrangesInterweave a pair of Ranges objects together — interweave • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -145,7 +145,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/ranges-names.html b/reference/ranges-names.html index 77fcc77..840f5ce 100644 --- a/reference/ranges-names.html +++ b/reference/ranges-names.html @@ -1,5 +1,5 @@ -Tools for working with named Ranges — remove_names • plyrangesTools for working with named Ranges — remove_names • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -134,7 +134,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/ranges-nearest.html b/reference/ranges-nearest.html index cded75f..f57b1a5 100644 --- a/reference/ranges-nearest.html +++ b/reference/ranges-nearest.html @@ -1,5 +1,5 @@ -Find nearest neighbours between two Ranges objects — join_nearest • plyrangesFind nearest neighbours between two Ranges objects — join_nearest • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -193,7 +193,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/ranges-overlaps-self.html b/reference/ranges-overlaps-self.html index 5fcfebc..8eaff62 100644 --- a/reference/ranges-overlaps-self.html +++ b/reference/ranges-overlaps-self.html @@ -1,5 +1,5 @@ -Find overlaps within a Ranges object — join_overlap_self • plyrangesFind overlaps within a Ranges object — join_overlap_self • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -177,7 +177,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/ranges-overlaps.html b/reference/ranges-overlaps.html index 9afb25f..c6a3f7e 100644 --- a/reference/ranges-overlaps.html +++ b/reference/ranges-overlaps.html @@ -1,5 +1,5 @@ -Find overlap between two Ranges — find_overlaps • plyrangesFind overlap between two Ranges — find_overlaps • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -271,7 +271,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/ranges-pairs.html b/reference/ranges-pairs.html index ab6ffcf..803ab80 100644 --- a/reference/ranges-pairs.html +++ b/reference/ranges-pairs.html @@ -1,5 +1,5 @@ -Pair together two ranges objects — pair_overlaps • plyrangesPair together two ranges objects — pair_overlaps • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -208,7 +208,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/ranges-precede.html b/reference/ranges-precede.html index e80c330..800f5ce 100644 --- a/reference/ranges-precede.html +++ b/reference/ranges-precede.html @@ -1,5 +1,5 @@ -Find preceding Ranges — join_precede • plyrangesFind preceding Ranges — join_precede • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -170,7 +170,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/ranges-reduce.html b/reference/ranges-reduce.html index c000385..6c3f772 100644 --- a/reference/ranges-reduce.html +++ b/reference/ranges-reduce.html @@ -1,5 +1,5 @@ -Reduce then aggregate a Ranges object — reduce_ranges • plyrangesReduce then aggregate a Ranges object — reduce_ranges • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -174,7 +174,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/ranges-select.html b/reference/ranges-select.html index 1d20020..156d577 100644 --- a/reference/ranges-select.html +++ b/reference/ranges-select.html @@ -1,5 +1,5 @@ -Select metadata columns of the Ranges object by name or position — select.Ranges • plyrangesSelect metadata columns of the Ranges object by name or position — select.Ranges • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -197,7 +197,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/ranges-setops.html b/reference/ranges-setops.html index c94bde2..2b60135 100644 --- a/reference/ranges-setops.html +++ b/reference/ranges-setops.html @@ -1,5 +1,5 @@ -Vector-wise Range set-operations — intersect_ranges • plyrangesVector-wise Range set-operations — intersect_ranges • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -182,7 +182,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/ranges-setters.html b/reference/ranges-setters.html index a4c3a45..10c9f12 100644 --- a/reference/ranges-setters.html +++ b/reference/ranges-setters.html @@ -1,5 +1,5 @@ -Functional setters for Ranges objects — set_width • plyrangesFunctional setters for Ranges objects — set_width • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -124,7 +124,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/ranges-shift.html b/reference/ranges-shift.html index 7c8b365..7d953e1 100644 --- a/reference/ranges-shift.html +++ b/reference/ranges-shift.html @@ -1,5 +1,5 @@ -Shift all coordinates in a genomic interval left or right, upstream or downstream — shift_left • plyrangesShift all coordinates in a genomic interval left or right, upstream or downstream — shift_left • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -170,7 +170,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/ranges-summarise.html b/reference/ranges-summarise.html index 8d51935..711197f 100644 --- a/reference/ranges-summarise.html +++ b/reference/ranges-summarise.html @@ -1,5 +1,5 @@ -Reduce multiple values in a Ranges down to a single value — summarise.Ranges • plyrangesReduce multiple values in a Ranges down to a single value — summarise.Ranges • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -127,7 +127,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/ranges-tile.html b/reference/ranges-tile.html index 534d3d1..b3bcfcd 100644 --- a/reference/ranges-tile.html +++ b/reference/ranges-tile.html @@ -1,5 +1,5 @@ -Slide or tile over a Ranges object — tile_ranges • plyrangesSlide or tile over a Ranges object — tile_ranges • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -166,7 +166,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/slice-ranges.html b/reference/slice-ranges.html index 3dd6fa1..36ac3c6 100644 --- a/reference/slice-ranges.html +++ b/reference/slice-ranges.html @@ -1,5 +1,5 @@ -Choose rows by their position — slice.Ranges • plyrangesChoose rows by their position — slice.Ranges • plyranges @@ -17,7 +17,7 @@ plyranges - 1.23.1 + 1.23.2 @@ -194,7 +194,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/stretch.html b/reference/stretch.html index ef58f44..1dc7060 100644 --- a/reference/stretch.html +++ b/reference/stretch.html @@ -1,5 +1,5 @@ -Stretch a genomic interval — stretch • plyrangesStretch a genomic interval — stretch • plyranges plyranges - 1.23.1 + 1.23.2 @@ -169,7 +169,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/reference/tidyverse-reexports.html b/reference/tidyverse-reexports.html index 5045f2d..0250f32 100644 --- a/reference/tidyverse-reexports.html +++ b/reference/tidyverse-reexports.html @@ -1,5 +1,5 @@ -Objects exported from other packages. — reexports • plyrangesObjects exported from other packages. — reexports • plyranges plyranges - 1.23.1 + 1.23.2 @@ -106,7 +106,7 @@

Objects exported from other packages.

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.