From 966fbfbac3ef18b19ee31a7e84e6e92e1e2bd5dc Mon Sep 17 00:00:00 2001 From: Jenny Bryan Date: Wed, 18 Sep 2024 19:13:31 -0700 Subject: [PATCH] revdepcheck::cloud_check() --- revdep/README.md | 33 +- revdep/cran.md | 58 ++- revdep/failures.md | 472 ++++++++++++++++++++++- revdep/problems.md | 924 ++++++++++++++++++++++++++++++++++++++++++++- 4 files changed, 1460 insertions(+), 27 deletions(-) diff --git a/revdep/README.md b/revdep/README.md index 7e84f97..03755c9 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -1,14 +1,31 @@ # Revdeps -## Failed to check (1) +## Failed to check (8) -|package |version |error |warning |note | -|:----------------|:-------|:-----|:-------|:----| -|TriDimRegression |1.0.2 |1 | | | +|package |version |error |warning |note | +|:----------------|:-------|:------|:-------|:----| +|censored |? | | | | +|covid19india |0.1.4 |1 | | | +|multinma |0.7.2 |1 | | | +|OVtool |1.0.3 |1 | | | +|[params](failures.md#params)|0.7.3 |__+1__ | | | +|scCustomize |2.1.2 |1 | |1 | +|shinyTempSignal |0.0.8 |1 | | | +|TriDimRegression |1.0.2 |1 | | | -## New problems (1) +## New problems (11) -|package |version |error |warning |note | -|:------------|:-------|:------|:-------|:----| -|[diseasystore](problems.md#diseasystore)|0.1 |__+1__ | | | +|package |version |error |warning |note | +|:------------------|:-------|:--------|:-------|:--------| +|[adoptr](problems.md#adoptr)|1.1.0 |1 __+2__ | |__+1__ | +|[atrrr](problems.md#atrrr)|0.0.3 |__+1__ | | | +|[codebook](problems.md#codebook)|0.9.2 |1 | |3 __+1__ | +|[gtreg](problems.md#gtreg)|0.4.0 |__+2__ | | | +|[gtsummary](problems.md#gtsummary)|2.0.2 |__+2__ | |__+1__ | +|[logger](problems.md#logger)|0.3.0 |__+1__ |1 |1 | +|[odin](problems.md#odin)|1.2.5 |1 __+2__ | |__+1__ | +|[roxytypes](problems.md#roxytypes)|0.1.0 |__+2__ | |1 | +|[shinyCohortBuilder](problems.md#shinycohortbuilder)|0.2.1 |__+2__ | |__+1__ | +|[sqltargets](problems.md#sqltargets)|0.2.0 |__+1__ | | | +|[table.glue](problems.md#tableglue)|0.0.3 |__+3__ | |__+1__ | diff --git a/revdep/cran.md b/revdep/cran.md index 031dab5..3125af2 100644 --- a/revdep/cran.md +++ b/revdep/cran.md @@ -1,18 +1,68 @@ ## revdepcheck results -We checked 713 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. +We checked 802 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. - * We saw 1 new problems - * We failed to check 1 packages + * We saw 11 new problems + * We failed to check 8 packages Issues with CRAN packages are summarised below. ### New problems (This reports the first line of each new failure) -* diseasystore +* adoptr + checking examples ... ERROR checking tests ... ERROR + checking re-building of vignette outputs ... NOTE + +* atrrr + checking tests ... ERROR + +* codebook + checking re-building of vignette outputs ... NOTE + +* gtreg + checking examples ... ERROR + checking tests ... ERROR + +* gtsummary + checking examples ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* logger + checking tests ... ERROR + +* odin + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... NOTE + +* roxytypes + checking examples ... ERROR + checking tests ... ERROR + +* shinyCohortBuilder + checking examples ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* sqltargets + checking tests ... ERROR + +* table.glue + checking examples ... ERROR + checking tests ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE ### Failed to check +* censored (NA) +* covid19india (NA) +* multinma (NA) +* OVtool (NA) +* params (NA) +* scCustomize (NA) +* shinyTempSignal (NA) * TriDimRegression (NA) diff --git a/revdep/failures.md b/revdep/failures.md index 2721cf4..d13218b 100644 --- a/revdep/failures.md +++ b/revdep/failures.md @@ -1,3 +1,473 @@ +# censored + +
+ +* Version: 0.3.2 +* GitHub: https://github.com/tidymodels/censored +* Source code: https://github.com/cran/censored +* Date/Publication: 2024-06-11 18:10:02 UTC +* Number of recursive dependencies: 164 + +Run `revdepcheck::cloud_details(, "censored")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/censored/new/censored.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘censored/DESCRIPTION’ ... OK +... +* this is package ‘censored’ version ‘0.3.2’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required and available but unsuitable version: ‘survival’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/censored/old/censored.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘censored/DESCRIPTION’ ... OK +... +* this is package ‘censored’ version ‘0.3.2’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required and available but unsuitable version: ‘survival’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# covid19india + +
+ +* Version: 0.1.4 +* GitHub: https://github.com/maxsal/covid19india +* Source code: https://github.com/cran/covid19india +* Date/Publication: 2021-10-09 15:00:30 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "covid19india")` for more info + +
+ +## In both + +* checking whether package ‘covid19india’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/covid19india/new/covid19india.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘covid19india’ ... +** package ‘covid19india’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘covid19india’ +* removing ‘/tmp/workdir/covid19india/new/covid19india.Rcheck/covid19india’ + + +``` +### CRAN + +``` +* installing *source* package ‘covid19india’ ... +** package ‘covid19india’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘covid19india’ +* removing ‘/tmp/workdir/covid19india/old/covid19india.Rcheck/covid19india’ + + +``` +# multinma + +
+ +* Version: 0.7.2 +* GitHub: https://github.com/dmphillippo/multinma +* Source code: https://github.com/cran/multinma +* Date/Publication: 2024-09-16 12:20:02 UTC +* Number of recursive dependencies: 152 + +Run `revdepcheck::cloud_details(, "multinma")` for more info + +
+ +## In both + +* checking whether package ‘multinma’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/multinma/new/multinma.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘multinma’ ... +** package ‘multinma’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_param_namespace::model_survival_param; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_param.o] Error 1 +ERROR: compilation failed for package ‘multinma’ +* removing ‘/tmp/workdir/multinma/new/multinma.Rcheck/multinma’ + + +``` +### CRAN + +``` +* installing *source* package ‘multinma’ ... +** package ‘multinma’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_param_namespace::model_survival_param; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_param.o] Error 1 +ERROR: compilation failed for package ‘multinma’ +* removing ‘/tmp/workdir/multinma/old/multinma.Rcheck/multinma’ + + +``` +# OVtool + +
+ +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/OVtool +* Date/Publication: 2021-11-02 08:10:07 UTC +* Number of recursive dependencies: 157 + +Run `revdepcheck::cloud_details(, "OVtool")` for more info + +
+ +## In both + +* checking whether package ‘OVtool’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/OVtool/new/OVtool.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘OVtool’ ... +** package ‘OVtool’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘twang’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘OVtool’ +* removing ‘/tmp/workdir/OVtool/new/OVtool.Rcheck/OVtool’ + + +``` +### CRAN + +``` +* installing *source* package ‘OVtool’ ... +** package ‘OVtool’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘twang’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘OVtool’ +* removing ‘/tmp/workdir/OVtool/old/OVtool.Rcheck/OVtool’ + + +``` +# params + +
+ +* Version: 0.7.3 +* GitHub: https://github.com/sahilseth/params +* Source code: https://github.com/cran/params +* Date/Publication: 2021-03-01 20:00:06 UTC +* Number of recursive dependencies: 53 + +Run `revdepcheck::cloud_details(, "params")` for more info + +
+ +## Newly broken + +* checking whether package ‘params’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/params/new/params.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘params’ ... +** package ‘params’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +Error: package or namespace load failed for ‘params’: + .onLoad failed in loadNamespace() for 'params', details: + call: glue_data(.x = NULL, ..., .sep = .sep, .envir = .envir, .open = .open, + error: is.environment(.envir) is not TRUE +Error: loading failed +Execution halted +ERROR: loading failed +* removing ‘/tmp/workdir/params/new/params.Rcheck/params’ + + +``` +### CRAN + +``` +* installing *source* package ‘params’ ... +** package ‘params’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (params) + + +``` +# scCustomize + +
+ +* Version: 2.1.2 +* GitHub: https://github.com/samuel-marsh/scCustomize +* Source code: https://github.com/cran/scCustomize +* Date/Publication: 2024-02-28 19:40:02 UTC +* Number of recursive dependencies: 267 + +Run `revdepcheck::cloud_details(, "scCustomize")` for more info + +
+ +## In both + +* checking whether package ‘scCustomize’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck/00install.out’ for details. + ``` + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘Nebulosa’ + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘scCustomize’ ... +** package ‘scCustomize’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required +Execution halted +ERROR: lazy loading failed for package ‘scCustomize’ +* removing ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck/scCustomize’ + + +``` +### CRAN + +``` +* installing *source* package ‘scCustomize’ ... +** package ‘scCustomize’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required +Execution halted +ERROR: lazy loading failed for package ‘scCustomize’ +* removing ‘/tmp/workdir/scCustomize/old/scCustomize.Rcheck/scCustomize’ + + +``` +# shinyTempSignal + +
+ +* Version: 0.0.8 +* GitHub: https://github.com/YuLab-SMU/shinyTempSignal +* Source code: https://github.com/cran/shinyTempSignal +* Date/Publication: 2024-03-06 08:00:02 UTC +* Number of recursive dependencies: 137 + +Run `revdepcheck::cloud_details(, "shinyTempSignal")` for more info + +
+ +## In both + +* checking whether package ‘shinyTempSignal’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/shinyTempSignal/new/shinyTempSignal.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘shinyTempSignal’ ... +** package ‘shinyTempSignal’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘shinyTempSignal’ +* removing ‘/tmp/workdir/shinyTempSignal/new/shinyTempSignal.Rcheck/shinyTempSignal’ + + +``` +### CRAN + +``` +* installing *source* package ‘shinyTempSignal’ ... +** package ‘shinyTempSignal’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘shinyTempSignal’ +* removing ‘/tmp/workdir/shinyTempSignal/old/shinyTempSignal.Rcheck/shinyTempSignal’ + + +``` # TriDimRegression
@@ -6,7 +476,7 @@ * GitHub: https://github.com/alexander-pastukhov/tridim-regression * Source code: https://github.com/cran/TriDimRegression * Date/Publication: 2023-09-13 14:10:03 UTC -* Number of recursive dependencies: 100 +* Number of recursive dependencies: 99 Run `revdepcheck::cloud_details(, "TriDimRegression")` for more info diff --git a/revdep/problems.md b/revdep/problems.md index f483c38..f56b29f 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -1,24 +1,673 @@ -# diseasystore +# adoptr
-* Version: 0.1 -* GitHub: https://github.com/ssi-dk/diseasystore -* Source code: https://github.com/cran/diseasystore -* Date/Publication: 2023-12-20 16:10:02 UTC -* Number of recursive dependencies: 136 +* Version: 1.1.0 +* GitHub: https://github.com/optad/adoptr +* Source code: https://github.com/cran/adoptr +* Date/Publication: 2024-08-19 07:30:08 UTC +* Number of recursive dependencies: 87 -Run `revdepcheck::cloud_details(, "diseasystore")` for more info +Run `revdepcheck::cloud_details(, "adoptr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘adoptr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: composite + > ### Title: Score Composition + > ### Aliases: composite evaluate,CompositeScore,TwoStageDesign-method + > + > ### ** Examples + > + > ess <- ExpectedSampleSize(Normal(), PointMassPrior(.4, 1)) + > power <- Power(Normal(), PointMassPrior(.4, 1)) + > + > # linear combination: + > composite({ess - 50*power}) + Error in glue_data(.x = NULL, ..., .sep = .sep, .envir = .envir, .open = .open, : + is.environment(.envir) is not TRUE + Calls: ... as_character -> -> glue_data -> stopifnot + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(adoptr) + + Attaching package: 'adoptr' + + The following object is masked from 'package:testthat': + + ... + 24. │ ├─glue:::with_glue_error(...) + 25. │ │ └─base::withCallingHandlers(...) + 26. │ └─base::eval(expr, envir) + 27. │ └─base::eval(expr, envir) + 28. └─glue (local) ``(``) + 29. └─rlang::abort(message, parent = cnd, call = NULL) + + [ FAIL 4 | WARN 0 | SKIP 0 | PASS 386 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... NOTE + ``` + Error(s) in re-building vignettes: + --- re-building ‘adoptr.Rmd’ using rmarkdown + ``` + +## In both + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘adoptr_jss.Rmd’ + ... + + > ess <- ExpectedSampleSize(dist = datadist, prior = alternative) + + > initial_design <- get_initial_design(theta = 0.3, + + alpha = 0.025, beta = 0.1, type = "two-stage", dist = datadist, + + order = 7) + + ... + ! is.environment(.envir) is not TRUE + Execution halted + + ‘adoptr.Rmd’ using ‘UTF-8’... OK + ‘adoptr_jss.Rmd’ using ‘UTF-8’... failed + ‘composite-scores.Rmd’ using ‘UTF-8’... OK + ‘conditional-scores.Rmd’ using ‘UTF-8’... failed + ‘defining-new-scores.Rmd’ using ‘UTF-8’... OK + ‘other-endpoints.Rmd’ using ‘UTF-8’... OK + ‘working-with-priors.Rmd’ using ‘UTF-8’... failed + ``` + +# atrrr + +
+ +* Version: 0.0.3 +* GitHub: https://github.com/JBGruber/atrrr +* Source code: https://github.com/cran/atrrr +* Date/Publication: 2024-03-05 15:40:02 UTC +* Number of recursive dependencies: 99 + +Run `revdepcheck::cloud_details(, "atrrr")` for more info
## Newly broken +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 13. │ └─glue::glue_data(...) + 14. │ └─base::stopifnot(is.environment(.envir)) + 15. │ └─base::stop(simpleError(msg, call = if (p <- sys.parent(1L)) sys.call(p))) + 16. └─purrr (local) ``(``) + 17. └─cli::cli_abort(...) + 18. └─rlang::abort(...) + + [ FAIL 6 | WARN 0 | SKIP 2 | PASS 146 ] + Error: Test failures + Execution halted + ``` + +# codebook + +
+ +* Version: 0.9.2 +* GitHub: https://github.com/rubenarslan/codebook +* Source code: https://github.com/cran/codebook +* Date/Publication: 2020-06-06 23:40:03 UTC +* Number of recursive dependencies: 155 + +Run `revdepcheck::cloud_details(, "codebook")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... NOTE + ``` + Error(s) in re-building vignettes: + --- re-building ‘codebook.Rmd’ using rmarkdown + Failed with error: 'there is no package called 'GGally'' + Failed with error: 'there is no package called 'GGally'' + + Quitting from lines 85-86 [cb] (codebook.Rmd) + Error: processing vignette 'codebook.Rmd' failed with diagnostics: + is.environment(.envir) is not TRUE + --- failed re-building ‘codebook.Rmd’ + + ... + Error: processing vignette 'codebook_tutorial.Rmd' failed with diagnostics: + is.environment(.envir) is not TRUE + --- failed re-building ‘codebook_tutorial.Rmd’ + + SUMMARY: processing the following files failed: + ‘codebook.Rmd’ ‘codebook_qualtrics.Rmd’ ‘codebook_sav.Rmd’ + ‘codebook_tutorial.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘codebook.Rmd’ + ... + + + + + + Quitting from lines 17-22 [rmdpartial-1] + + ... + Quitting from lines 17-22 [rmdpartial-1] + + When sourcing ‘codebook_tutorial.R’: + Error: is.environment(.envir) is not TRUE + Execution halted + + ‘codebook.Rmd’ using ‘UTF-8’... failed + ‘codebook_qualtrics.Rmd’ using ‘UTF-8’... failed + ‘codebook_sav.Rmd’ using ‘UTF-8’... failed + ‘codebook_tutorial.Rmd’ using ‘UTF-8’... failed + ``` + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘userfriendlyscience’ + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘graphics’ ‘jsonlite’ ‘rlang’ ‘tidyselect’ ‘vctrs’ + All declared Imports should be used. + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 65 marked UTF-8 strings + ``` + +# gtreg + +
+ +* Version: 0.4.0 +* GitHub: https://github.com/shannonpileggi/gtreg +* Source code: https://github.com/cran/gtreg +* Date/Publication: 2024-07-25 17:20:02 UTC +* Number of recursive dependencies: 102 + +Run `revdepcheck::cloud_details(, "gtreg")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gtreg-Ex.R’ failed + The error most likely occurred in: + + > ### Name: tbl_reg_summary + > ### Title: Data Summary Table + > ### Aliases: tbl_reg_summary + > + > ### ** Examples + > + > tbl_reg_summary_ex1 <- + ... + 41. ├─gtsummary:::map(...) + 42. │ └─base::lapply(.x, .f, ...) + 43. │ └─gtsummary (local) FUN(X[[i]], ...) + 44. │ └─glue::glue(...) + 45. │ └─glue::glue_data(...) + 46. │ └─base::stopifnot(is.environment(.envir)) + 47. │ └─base::stop(simpleError(msg, call = if (p <- sys.parent(1L)) sys.call(p))) + 48. └─dplyr (local) ``(``) + 49. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) + Execution halted + ``` + * checking tests ... ERROR ``` Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(gtreg) + + Attaching package: 'gtreg' + + The following object is masked from 'package:testthat': + ... + 50. │ └─glue::glue(...) + 51. │ └─glue::glue_data(...) + 52. │ └─base::stopifnot(is.environment(.envir)) + 53. │ └─base::stop(simpleError(msg, call = if (p <- sys.parent(1L)) sys.call(p))) + 54. └─dplyr (local) ``(``) + 55. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) + + [ FAIL 11 | WARN 34 | SKIP 4 | PASS 65 ] + Error: Test failures + Execution halted + ``` + +# gtsummary + +
+ +* Version: 2.0.2 +* GitHub: https://github.com/ddsjoberg/gtsummary +* Source code: https://github.com/cran/gtsummary +* Date/Publication: 2024-09-05 21:20:02 UTC +* Number of recursive dependencies: 184 + +Run `revdepcheck::cloud_details(, "gtsummary")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gtsummary-Ex.R’ failed + The error most likely occurred in: + + > ### Name: add_ci + > ### Title: Add CI Column + > ### Aliases: add_ci add_ci.tbl_summary + > + > ### ** Examples + > + > ## Don't show: + ... + 39. │ ├─dplyr::same_src(x, y) + 40. │ └─dplyr:::same_src.data.frame(x, y) + 41. │ └─base::is.data.frame(y) + 42. ├─glue::glue(...) + 43. │ └─glue::glue_data(...) + 44. │ └─base::stopifnot(is.environment(.envir)) + 45. │ └─base::stop(simpleError(msg, call = if (p <- sys.parent(1L)) sys.call(p))) + 46. └─dplyr (local) ``(``) + 47. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) + Execution halted + ``` + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘gtsummary_definition.Rmd’ + ... + + tbl_regression() %>% bold_p(t = 0.5) + + > tbl_summary_ex <- trial %>% select(trt, age, grade, + + response) %>% tbl_summary(by = trt) + + When sourcing ‘gtsummary_definition.R’: + Error: ℹ In argument: `stat = as.character(...)`. + Caused by error in `glue_data()`: + ! is.environment(.envir) is not TRUE + Execution halted + + ‘gtsummary_definition.Rmd’ using ‘UTF-8’... failed + ``` + +* checking re-building of vignette outputs ... NOTE + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘gtsummary_definition.Rmd’ using rmarkdown + + Quitting from lines 27-38 [setup] (gtsummary_definition.Rmd) + Error: processing vignette 'gtsummary_definition.Rmd' failed with diagnostics: + ℹ In argument: `stat = as.character(...)`. + Caused by error in `glue_data()`: + ! is.environment(.envir) is not TRUE + --- failed re-building ‘gtsummary_definition.Rmd’ + + SUMMARY: processing the following file failed: + ‘gtsummary_definition.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# logger + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/daroczig/logger +* Source code: https://github.com/cran/logger +* Date/Publication: 2024-03-05 16:20:02 UTC +* Number of recursive dependencies: 123 + +Run `revdepcheck::cloud_details(, "logger")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(logger) + > + > if (identical(Sys.getenv("NOT_CRAN"), "true")) { + + test_check('logger') + + } else { + + test_check('logger', filter = '^[a-z]*$') + ... + 16. ├─base::do.call(...) + 17. └─logger (local) ``(...) + 18. └─base::tryCatch(...) + 19. └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 20. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 21. └─value[[3L]](cond) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 228 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking running R code from vignettes ... WARNING + ``` + Errors in running code in vignettes: + when running code in ‘migration.Rmd’ + ... + > oldconf <- list(threshold = log_threshold(), layout = log_layout(), + + formatter = log_formatter(), appender = log_appender()) + + > log_appender(appender_stdout) + + > library(futile.logger) + + ... + Error: there is no package called ‘futile.logger’ + Execution halted + + ‘Intro.Rmd’ using ‘UTF-8’... OK + ‘anatomy.Rmd’ using ‘UTF-8’... OK + ‘customize_logger.Rmd’ using ‘UTF-8’... OK + ‘migration.Rmd’ using ‘UTF-8’... failed + ‘performance.Rmd’ using ‘UTF-8’... OK + ‘r_packages.Rmd’ using ‘UTF-8’... OK + ‘write_custom_extensions.Rmd’ using ‘UTF-8’... OK + ``` + +* checking package dependencies ... NOTE + ``` + Packages which this enhances but not available for checking: + 'logging', 'futile.logger', 'log4r' + ``` + +# odin + +
+ +* Version: 1.2.5 +* GitHub: https://github.com/mrc-ide/odin +* Source code: https://github.com/cran/odin +* Date/Publication: 2023-10-02 13:40:11 UTC +* Number of recursive dependencies: 57 + +Run `revdepcheck::cloud_details(, "odin")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘odin-Ex.R’ failed + The error most likely occurred in: + + > ### Name: odin_package + > ### Title: Create odin model in a package + > ### Aliases: odin_package + > + > ### ** Examples + > + > path <- tempfile() + ... + > # But contains odin files in inst/odin + > dir(file.path(pkg, "inst/odin")) + [1] "lorenz.R" + > + > # Compile the odin code in the package + > odin::odin_package(pkg) + Error in glue_data(.x = NULL, ..., .sep = .sep, .envir = .envir, .open = .open, : + is.environment(.envir) is not TRUE + Calls: ... glue_whisker -> -> glue_data -> stopifnot + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(odin) + > + > test_check("odin") + [ FAIL 7 | WARN 0 | SKIP 23 | PASS 1049 ] + + ══ Skipped tests (23) ══════════════════════════════════════════════════════════ + ... + `expected`: TRUE + ── Failure ('test-odin-build.R:29:3'): build from ir ─────────────────────────── + res$error is not NULL + + `actual` is a character vector ('is.environment(.envir) is not TRUE') + `expected` is NULL + + [ FAIL 7 | WARN 0 | SKIP 23 | PASS 1049 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... NOTE + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘discrete.Rmd’ using rmarkdown + + Quitting from lines 192-194 [unnamed-chunk-2] (discrete.Rmd) + Error: processing vignette 'discrete.Rmd' failed with diagnostics: + is.environment(.envir) is not TRUE + --- failed re-building ‘discrete.Rmd’ + + --- re-building ‘functions.Rmd’ using rmarkdown + ... + Quitting from lines 58-59 [unnamed-chunk-3] (odin.Rmd) + Error: processing vignette 'odin.Rmd' failed with diagnostics: + is.environment(.envir) is not TRUE + --- failed re-building ‘odin.Rmd’ + + SUMMARY: processing the following files failed: + ‘discrete.Rmd’ ‘odin.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘discrete.Rmd’ + ... + beta <- user(0.2) + gamma <- user(0.1) + ``` + + > sir_generator <- odin::odin(path_sir_model) + Loading required namespace: pkgbuild + + ... + > generator <- odin::odin(path_logistic) + Loading required namespace: pkgbuild + + When sourcing ‘odin.R’: + Error: is.environment(.envir) is not TRUE + Execution halted + + ‘discrete.Rmd’ using ‘UTF-8’... failed + ‘functions.Rmd’ using ‘UTF-8’... OK + ‘odin.Rmd’ using ‘UTF-8’... failed + ``` + +# params + +
+ +* Version: 0.7.3 +* GitHub: https://github.com/sahilseth/params +* Source code: https://github.com/cran/params +* Date/Publication: 2021-03-01 20:00:06 UTC +* Number of recursive dependencies: 53 + +Run `revdepcheck::cloud_details(, "params")` for more info + +
+ +## Newly broken + +* checking whether package ‘params’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/params/new/params.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘params’ ... +** package ‘params’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +Error: package or namespace load failed for ‘params’: + .onLoad failed in loadNamespace() for 'params', details: + call: glue_data(.x = NULL, ..., .sep = .sep, .envir = .envir, .open = .open, + error: is.environment(.envir) is not TRUE +Error: loading failed +Execution halted +ERROR: loading failed +* removing ‘/tmp/workdir/params/new/params.Rcheck/params’ + + +``` +### CRAN + +``` +* installing *source* package ‘params’ ... +** package ‘params’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (params) + + +``` +# roxytypes + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/openpharma/roxytypes +* Source code: https://github.com/cran/roxytypes +* Date/Publication: 2024-02-29 20:30:02 UTC +* Number of recursive dependencies: 44 + +Run `revdepcheck::cloud_details(, "roxytypes")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘roxytypes-Ex.R’ failed + The error most likely occurred in: + + > ### Name: build_format_regex + > ### Title: Build format regular expression + > ### Aliases: build_format_regex re_backticked re_any escape_non_glue_re + > + > ### ** Examples + > + > re <- roxytypes:::build_format_regex( + + "{as}{any}{bs}", + + as = "a+", + + bs = "b+", + + any = ".*?" + + ) + Error in glue_data(.x = NULL, ..., .sep = .sep, .envir = .envir, .open = .open, : + is.environment(.envir) is not TRUE + Calls: -> -> glue_data -> stopifnot + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. @@ -26,16 +675,263 @@ Run `revdepcheck::cloud_details(, "diseasystore")` for more info > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files ... - Caused by error in `dplyr::db_write_table()`: - ! Can't write table table `dbplyr_045`. - Caused by error: - ! Invalid result set + 10. │ │ └─base::withVisible(code) + 11. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) + 12. └─roxytypes:::build_format_regex("(`{type}`) {description}") at test-convert.R:165:5 + 13. └─glue::glue(format, .envir = as.list(keywords)) + 14. └─glue::glue_data(...) + 15. └─base::stopifnot(is.environment(.envir)) - [ FAIL 1 | WARN 1 | SKIP 0 | PASS 469 ] + [ FAIL 4 | WARN 0 | SKIP 0 | PASS 170 ] Error: Test failures - In addition: Warning message: - Closing open result set, pending rows Execution halted ``` +## In both + +* checking package dependencies ... NOTE + ``` + Package which this enhances but not available for checking: ‘roxylint’ + ``` + +# shinyCohortBuilder + +
+ +* Version: 0.2.1 +* GitHub: NA +* Source code: https://github.com/cran/shinyCohortBuilder +* Date/Publication: 2023-08-28 09:20:02 UTC +* Number of recursive dependencies: 110 + +Run `revdepcheck::cloud_details(, "shinyCohortBuilder")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘shinyCohortBuilder-Ex.R’ failed + The error most likely occurred in: + + > ### Name: pre_post_stats + > ### Title: Generate structure of pre/post statistics + > ### Aliases: pre_post_stats .pre_post_stats .pre_post_stats_text + > + > ### ** Examples + > + > .pre_post_stats(5, 10, "books") + books 5 / 10 + > .pre_post_stats_text(5, 10, "books") + Error in glue_data(.x = NULL, ..., .sep = .sep, .envir = .envir, .open = .open, : + is.environment(.envir) is not TRUE + Calls: .pre_post_stats_text -> -> glue_data -> stopifnot + Execution halted + ``` + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘gui-filter-layer.Rmd’ + ... + $ get_params :function (name) + $ get_data :function (data_object) + $ get_defaults:function (data_object, cache_object) + + > .pre_post_stats_text(name = c("A", "B"), current = 1:2, + + previous = 3:4, stats = c("pre", "post")) + + When sourcing ‘gui-filter-layer.R’: + Error: is.environment(.envir) is not TRUE + Execution halted + + ‘custom-gui-layer.Rmd’ using ‘UTF-8’... OK + ‘gui-filter-layer.Rmd’ using ‘UTF-8’... failed + ‘package-options.Rmd’ using ‘UTF-8’... OK + ‘shinyCohortBuilder.Rmd’ using ‘UTF-8’... OK + ‘updating-source.Rmd’ using ‘UTF-8’... OK + ``` + +* checking re-building of vignette outputs ... NOTE + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘custom-gui-layer.Rmd’ using rmarkdown + --- finished re-building ‘custom-gui-layer.Rmd’ + + --- re-building ‘gui-filter-layer.Rmd’ using rmarkdown + + Quitting from lines 247-253 [unnamed-chunk-16] (gui-filter-layer.Rmd) + Error: processing vignette 'gui-filter-layer.Rmd' failed with diagnostics: + is.environment(.envir) is not TRUE + ... + --- finished re-building ‘shinyCohortBuilder.Rmd’ + + --- re-building ‘updating-source.Rmd’ using rmarkdown + --- finished re-building ‘updating-source.Rmd’ + + SUMMARY: processing the following file failed: + ‘gui-filter-layer.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# sqltargets + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/daranzolin/sqltargets +* Source code: https://github.com/cran/sqltargets +* Date/Publication: 2024-07-31 02:30:02 UTC +* Number of recursive dependencies: 69 + +Run `revdepcheck::cloud_details(, "sqltargets")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + 4. └─targets:::callr_outer(...) + 5. ├─targets:::if_any(...) + 6. └─targets:::callr_error(traced_condition = out, fun = fun) + 7. └─targets::tar_throw_run(message, class = class(traced_condition$condition)) + 8. └─targets::tar_error(...) + 9. └─rlang::abort(message = message, class = class, call = tar_empty_envir) + + [ FAIL 3 | WARN 0 | SKIP 0 | PASS 5 ] + Error: Test failures + Execution halted + ``` + +# table.glue + +
+ +* Version: 0.0.3 +* GitHub: https://github.com/bcjaeger/table.glue +* Source code: https://github.com/cran/table.glue +* Date/Publication: 2023-02-07 08:30:02 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "table.glue")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘table.glue-Ex.R’ failed + The error most likely occurred in: + + > ### Name: format_big + > ### Title: Format values left of decimal + > ### Aliases: format_big + > + > ### ** Examples + > + > + > big_x <- 1234567 + > + > rspec <- format_big(round_spec(), mark = '|', interval = 3) + > + > table_value(big_x, rspec) # returns "1|234|567" + Error in glue_data(.x = NULL, ..., .sep = .sep, .envir = .envir, .open = .open, : + is.environment(.envir) is not TRUE + Calls: table_value -> -> glue_data -> stopifnot + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(table.glue) + > + > test_check("table.glue") + [ FAIL 11 | WARN 0 | SKIP 0 | PASS 47 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") + 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) + 4. └─table.glue::table_value(x, rspec_mag_up) + 5. └─glue::glue("{round_using}_{round_half}", .envir = .rspec) + 6. └─glue::glue_data(...) + 7. └─base::stopifnot(is.environment(.envir)) + + [ FAIL 11 | WARN 0 | SKIP 0 | PASS 47 ] + Error: Test failures + Execution halted + ``` + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘default_rounder.Rmd’ + ... + > names(rspec) <- paste("table.glue", names(rspec), + + sep = ".") + + > options(rspec) + + > table_value(pi) + + ... + {height_upr})")`. + ℹ In group 1: `sex = "female"`. + Caused by error: + ! Failed to evaluate glue component {..f(height_est)} + Caused by error in `glue_data()`: + ! is.environment(.envir) is not TRUE + Execution halted + + ‘default_rounder.Rmd’ using ‘UTF-8’... failed + ‘table_guide.Rmd’ using ‘UTF-8’... failed + ``` + +* checking re-building of vignette outputs ... NOTE + ``` + Error(s) in re-building vignettes: + --- re-building ‘default_rounder.Rmd’ using rmarkdown + + Quitting from lines 53-58 [unnamed-chunk-4] (default_rounder.Rmd) + Error: processing vignette 'default_rounder.Rmd' failed with diagnostics: + is.environment(.envir) is not TRUE + --- failed re-building ‘default_rounder.Rmd’ + + --- re-building ‘table_guide.Rmd’ using rmarkdown + + ... + ! Failed to evaluate glue component {..f(height_est)} + Caused by error in `glue_data()`: + ! is.environment(.envir) is not TRUE + --- failed re-building ‘table_guide.Rmd’ + + SUMMARY: processing the following files failed: + ‘default_rounder.Rmd’ ‘table_guide.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` +