.gitignore

plots/*
data/bxd_private/*
csv/*
__pycache__/*
Rscripts/.*
.snakemake/*
.DS_Store
*.png
*.eps
*.ipynb
py_scripts/adj_pvalues.py 
py_scripts/fixed_var_spectrum.py
py_scripts/local_haplotype_matching.mgp.py
py_scripts/local_haplotype_matching.py
py_scripts/make_boxplots.py
py_scripts/mutation_rates_by_haplotype.py
py_scripts/mutation_rates_by_inbreeding_time.py
py_scripts/test.py
py_scripts/test2.py
py_scripts/pca_projection.by_haplotype.py
py_scripts/pca_projection.wild_mice.py
py_scripts/pairwise_mutation_distances.py
py_scripts/make_tidy_data.by_haplotype.py
py_scripts/wild_mice.segregating_alleles.py
py_scripts/__pycache__/*
data/gene_network_phenotypes/
data/sigprofiler_outdir/
sigprofoutdir/*
*.vcf.gz
*.tbi
*.vcf
*.bed
*.snakemake.log
.snakemake/
*.html
.vscode/
data/test.numbers
data/ref/
data/ete3_data/protein.reformatted.aln
data/ete3_data/refseq.codon_aligned.fa
data/ete3_data/refseq.codon_aligned.trimmed.fa
data/ete3_data/refseq.fa
data/ete3_data/tree.formatted.nwk