requirements.txt

argcomplete==3.2.3
argh==0.31.2
asttokens==2.4.1
attrs==23.2.0
biopython==1.83
bitarray==2.9.2
bitstring==4.1.4
blinker==1.7.0
cachetools==5.3.3
certifi==2024.2.2
cffi==1.16.0
charset-normalizer==3.3.2
click==8.1.7
cloudpickle==3.0.0
contourpy==1.2.0
cycler==0.12.1
Cython==3.0.9
dask==2024.3.1
dask-expr==1.0.5
decorator==5.1.1
deprecation==2.1.0
exceptiongroup==1.2.0
executing==2.0.1
Flask==3.0.2
fonttools==4.50.0
fsspec==2024.3.1
gffutils==0.10.1
h5py==3.10.0
hdmedians==0.14.2
idna==3.7
importlib_metadata==7.1.0
importlib_resources==6.4.0
iniconfig==2.0.0
ipython==8.18.1
itsdangerous==2.1.2
jedi==0.19.1
Jinja2==3.1.4
jsonlines==3.0.0
kiwisolver==1.4.5
locket==1.0.0
MarkupSafe==2.1.5
mashpit @ file:///Users/tongzhou/mashpit
matplotlib==3.8.3
matplotlib-inline==0.1.6
natsort==8.4.0
numpy==1.26.4
packaging==24.0
pandas==2.2.1
parso==0.8.3
partd==1.4.1
pexpect==4.9.0
pillow==10.3.0
pluggy==1.4.0
prompt-toolkit==3.0.43
protobuf==3.20.3
ptyprocess==0.7.0
pure-eval==0.2.2
pyarrow==15.0.2
pycparser==2.21
pyfaidx==0.8.1.1
Pygments==2.17.2
pyparsing==3.1.2
pytest==8.1.1
python-dateutil==2.8.2
python-dotenv==1.0.1
pytz==2024.1
PyYAML==6.0.1
requests==2.32.0
scikit-bio==0.5.9
scipy==1.10.1
screed==1.1.3
simplejson==3.19.2
six==1.16.0
sourmash==4.6.1
stack-data==0.6.3
tomli==2.0.1
toolz==0.12.1
tqdm==4.66.3
traitlets==5.14.2
typing_extensions==4.10.0
tzdata==2024.1
urllib3==1.26.19
wcwidth==0.2.13
Werkzeug==3.0.3
zipp==3.18.1
psutil==5.9.8
phytreeviz==0.2.0