ProcessM: Real-Time Intelligent Process Mining Software

Foldseek enables fast and sensitive comparisons of large structure sets.

Fiji / ImageJ plugin for Imaging Alignment. This plugin manages two types of alignment: Manual Alignment and Automatic Alignment.

golang for estimating the genome site proportion

Set of scripts to process HybSeq target enrichment HTS data (on computing grids).

dna/rna alignment classifier

⛏ HLA predictions from NGS shotgun data

Homework Solutions for Introduction to Bioinformatics Course as Computer Science B.Sc. Student at Department of Computer Engineering, Sharif University of Technology

create Font Awesome Dashboard for CSS assignment...

This repository streamlines the conversion of raw DNA sequencing data from FASTQ to BAM format, incorporating scripts that not only facilitate BAM conversion but also generate Sequence Alignment Map (SAM) files.

Genome read alignments visualizer

SeqMerger is designed to concatenate sequences from multiple aligned FASTA files.

Pairwise alignment of membrane protein sequences

STRAC (Scalable Trace Comparison) http://arxiv.org/pdf/1910.03478

Aligning INSEE SKOS concepts with relevant datasets.

Software tools to collect Coronavirus sequences and create protein and nucleotide HMMs

Calculate taxon-specific alignment statistics from a collection of UCE alignments

⛰ covtobed | Convert the coverage track from a BAM file into a BED file

Jupiter Bioinformatics (V2) uses the local sequence alignment algorithm and a few stored experiments for further experimentation on sequence alignment. It is an open source application designed in native JavaScript, that is able to align two sequences/texts in order to match the regions that are similar.

The effects of word segmentation quality on word alignments.