NER and Relation Extraction from Electronic Health Records (EHR).

Browse Covid-19 & SARS-CoV-2 Scientific Papers with Transformers 🦠 📖

Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)

MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)

Ready to use BioBert pytorch weights for HuggingFace pytorch BertModel 😌

Relation Extraction using BERT and BioBERT - using BERT, we achieved new state of the art results

Multi Label Text Classification of ICD-10-CM codes on the clinical record corpus for eHealth Lab CLEF - 2020

Training and computational/visualization analysis of BERT and BioBERT using PyTorch and huggingface.

A cost-sensitive BERT that handles the class imbalance for the task of biomedical NER.

COVID-19 Open Research Dataset Challenge (CORD-19)

The traditional machine learning models give a lot of pain when we do not have sufficient labeled data for the specific task or domain we care about to train a reliable model. Transfer learning allows us to deal with these scenarios by leveraging the already existing labeled data of some related task or domain. We try to store this knowledge gai…

summer internship project @ JetBrains Research

👑🦠 Annotating PMC and PubMed articles for Covid-related entities

Farida Hanna Campbell 2023

Efficient Delay Reason Extraction in Patient Appointments/Treatments Using BERT and Tensorflow. - Feb 2022 - Jun 2023

Fine-tuning pre-trained BERT architectures from Hugging face

Literature Mining for Neurodegenerative disease

This project is a demo for Bert Question Answering on medical data.

Bi Master - Grupo de desafios de NLP: Classificação Multiclasse, BIOBERT, spaCy, NER, POS, Tópicos, Geração de Texto, sentence-bert, Tensorflow USEm.

BioBert Enhanced Patient Treatment Similarity Analysis with Sentence Transformers