SIM-CE is an advanced, user-friendly modeling and simulation environment in Simulink, for performing multi-scale behavioral analysis of the nervous system of Caenorhabditis elegans (C. elegans).

Flexible and disposable paper and plastic-based gel micropads for nematode handling, imaging and chemical testing

deep-learning for metadata extraction from the C. elegans embryo

WormRuler: A video analysis software to analyze body length of Caenorhabditis elegans

WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans

Repository for WormSwin: Instance segmentation of C. elegans using vision transformer as appeared in Nature Scientific Reports 2023.

Development and training of advanced machine learning neural models designed to simulate worm cognition in response to the unique stressors of space, such as increased radiation and altered gravity and understand impact on worm behavior and cognition.

Repository of the code created for the Bachelor's Thesis (Trabajo Fin de Grado) of Viktoriya Bohach for the degree on Biomedical Engineering in Universidad Rey Juan Carlos.

Setting up C elegans as an RL environment.

Newtonian mechanics model for C. elegans locomotion

Simulate the C. Elegans worm brain in your browser and interact with the worm as it moves around.

Fluorescent analysis of individualized C. elegans without using neural networks

Bizzare conglomerate of C. Elegans and neuroscience thoughts.

Code implementation of the detection network capable of dealing with many overlapping spline bodies.

Implementation of CShaper https://doi.org/10.1038/s41467-020-19863-x