Chris plugin app simpledsapp

Edit the values of a collection of user specified DICOM tags

A ChRIS DS plugin to convert from medical image data files to display-friendly formats (like png and jpg).

Sample Application Plugin for Project ChRIS using Tensorflow

Pre-populated "dummy" plugin that copies some contained prior FreeSurfer run to output

A CHRIS 'DS' type plugin about a neural network based segmenter of prostate MRI data.

ChRIS plugin that runs ``mgz2image`` at each path/file location in an input tree. The CLI space is the union of ``pfdo`` and ``mgz2image``.

A 3D U-Net effective for Brain MRI segmentation

A plugin to convert mgz files to numpy or png files

A simple ChRIS 'ds' app that copies the contents of the `input` directory to an `output` directory.

An app to efficiently perform cortical parcellation and segmentation on raw brain MRI images

A DS plugin to convert NIfTI input to DICOM output

A GPU-aware matrix multiplier. Useful mainly for testing/benchmarking.

A ChRIS plug-in which provides special utility to run "imagemagick" Linux CLI programs using the pfdo_run utility.

Count the number of positive-intensity voxels in a masked MRI reconstruction

Chris plugin app simplefsapp

A plugin app for Freesurfer reconstruction of brain surfaces. Very early WIP

A ChRIS plugin to convert `mgz` to `png` or `jpeg` which will also be useful in other project workflows