QReadSelector is a subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework.
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Updated
Aug 26, 2015 - Java
QReadSelector is a subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework.
Bioinformatics Pipeline for dRADseq Data
This is a compilation of my scripts for denovo-RNA-Seq assembly, annotation, and get count metrics for Differential gene expression analysis in Nesi hpc.
A containerized nextflow pipeline designed to annotate prokaryote genomes.
This project plots the effect of selecting different kmer length parameter in 2 different de novo genome assembly tools - AbySS and Velvet.
Inversion status and de novo assembly of Drosophila melanogaster
🛠️🧬De Bruijn graph-based genome assembler📈📊
Python based implementation of De-Novo transcriptome assembly
A comprehensive workflow for de novo assembly of whole-genome shotgun sequencing data using Velvet, followed by BLAST searches to analyze assembled contigs.
CloudEC is a MapReduce-based algorithm for correcting errors in next-generation sequencing big data.
[A.A. 23/24] R. Napoli
Identification of transposon insertion sites
Workflow Template
De novo assembly pipeline for 10X linked-reads, used at the SciLifeLab National Genomics Infrastructure.
NextFlow pipeline for Virus Variant calling and de novo Assembly of Nanopore and Illumina Reads
De novo assembly pipeline for 10X linked-reads using Supernova
String Graph Construction on Spark
Biocore's de novo transcriptome assembly workflow based on Nextflow
Calling SNPs using UNEAK (de novo) pipeline for ponderosa pine
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