A software toolkit for the interconversion of standard data models for phenotypic data
-
Updated
Aug 9, 2024 - Perl
A software toolkit for the interconversion of standard data models for phenotypic data
Lecture slides on Electronic Health Record Data Quality
Repository for the GA4GH phenopacket schema
How to: create SNOMED CT codelists
[ML4H 2022] This is the code for our paper `Counterfactual and Factual Reasoning over Hypergraphs for Interpretable Clinical Predictions on EHR'.
How to: create drug codelists for recorded prescriptions
Cast different EHR (electronic health record) layers to a shared latent space to identify patient subtypes
How to: find acute exacerbation of COPD events in UK primary care electronic healthcare records
using AI model to infer patient phenotypes from identified named entities (instances of biomedical concepts)
The OMOP Common Data Model(v6) implemented in Django (v3)
Code accompanying our ACM CHIL paper: "TASTE: Temporal and Static Tensor Factorization for Phenotyping Electronic Health Records"
This project shows a method with a topic modeling approach: non-negative matrix factorization (NMF), used in EHR for subphenotyping and identifying the relationship between phenotypes and genetic variants
Introduction to PERMIT project resources
RETIRED - Clinical phenotyping and ETL system
Add a description, image, and links to the ehr-phenotyping topic page so that developers can more easily learn about it.
To associate your repository with the ehr-phenotyping topic, visit your repo's landing page and select "manage topics."