Parse and process FASTA and FASTQ formatted files of biological sequences.
omicR It creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data). It only works with BLAST V 2.7 or under.
fakit: a simple program for fasta file manipulation
A secure encryption tool for genomic data
This package enables you to deal with biological sequence files easily.
BioC++ Input/Output library
A mode for fasta files
Hadoop Sequence Parser (HSP) library
Removes duplicate sequences in multifasta file
A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.
A simple C library to extract the amino acid sequence from a file in PDB (Protein data bank) format and output to a FASTA format file.
Python Scripts for Haim Lab (Microbiology Research) Projects
Idris (Idris2) port of the Haskell biofasta library.
Idris (Idris2) port of the Haskell biocore library.
Small package used to parse a file in the Fasta format
Parse CSV files containing fasta components to a true fasta file.
simple and convenient program to convert fasta sequences to fastq sequences
Small and fast FASTA sequences length fetcher
Add a description, image, and links to the fasta-format topic page so that developers can more easily learn about it.
To associate your repository with the fasta-format topic, visit your repo's landing page and select "manage topics."