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genome-mining

Here are 11 public repositories matching this topic...

JinyuanSun / GPSE

Genome scAle Substrate Specific Enzyme pRediction

bioinformatics enzyme genome-mining

Updated Mar 5, 2023
Python

ZiemertLab / ARTS

Antibiotic Resistant Target Seeker (ARTS)

bioinformatics genome-mining antibiotic-resistance resistance-based-genome-mining

Updated Mar 13, 2024
Python

louwenjjr / mibig_classifications

Retrieve chemical classes (ClassyFire/NPClassifier), as well as BGC classifications for MIBiG BGCs and match them.

classification genome-mining natural-products metabologenomics metabolome-mining

Updated May 13, 2022
Jupyter Notebook

ZiemertLab / ARTSwebapp

Web application to display and log job uploads for the Antibiotic Resistant Target Seeker (ARTS)

bioinformatics genome-mining

Updated Feb 19, 2024
HTML

ZiemertLab / FunARTSwebapp

Web application to display and log job uploads for the Fungal bioActive compound Resistant Target Seeker (FunARTS)

bioinformatics genome-mining

Updated Feb 19, 2024
HTML

carpentries-incubator / genome-mining-workshop

Genome Mining Workshop Overview

english lesson alpha genome-mining carpentries-incubator

Updated Mar 5, 2024
Python

ZiemertLab / FunARTS

Fungal bioActive compound Resistant Target Seeker (FunARTS)

bioinformatics genome-mining resistance-based-genome-mining fungal-secondary-metabolites automated-bioactive-compound-discovery

Updated Feb 19, 2024
Python

kblin / fungal-ui

A web UI for the fungal version of antiSMASH.

gff3 genbank microbial-genomics microbiology fungi embl antismash secondary-metabolites genome-mining

Updated Apr 9, 2019
JavaScript

gnick18 / Fungal_ICSBGCs

Reproducible code and data repository for the fungal ICS BGC prediction publication. GitHub repository is managed by Grant Nickles. For any data related questions email gnickles@wisc.edu or gnick317@gmail.com. For publication questions reach out to the corresponding authors Dr. Drott at Milton.Drott@usda.gov or Dr. Keller at npkeller@wisc.edu.

bioinformatics fungi genome-mining natural-products

Updated Dec 7, 2023
HTML

DIGS-tool

giffordlabcvr / DIGS-tool

Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.

evolution comparative-genomics blast-searches genome-mining similarity-search molecular-genetics sequence-similarity dark-genome

Updated Aug 25, 2024
Perl

carpentries-incubator / genome-mining

Genome Mining in Prokaryotes

english lesson pre-alpha genome-mining carpentries-incubator

Updated Aug 23, 2024
Python

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