Benchmarks and evaluation scripts for the Fulgor index.
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Updated
May 15, 2023 - Python
Benchmarks and evaluation scripts for the Fulgor index.
[Features extraction method] You can find the new version of CASTOR_KRFE at https://github.com/bioinfoUQAM/CASTOR_KRFE
This is our implementation for D2 distance algorithm for k-mers.
DNA CLASSIFICATION
Alignment-Free phylogenetic tree construction from .fasta sequence files
Visualization package for kmeRs similarity score matrix
This is the repository of the pipeline META-DIFF, which detects sequences in differential abundances between two conditions, and annotates them taxonomicaly and functionaly.
Coding problems from course 1 of the Bioinformatics specialization
An algorithm for finding SNPs of a long read compared to a reference genome
A collection of various biopython scripts.
Generate K-mer spectra to observe modalities of distributions
Evaluation of Statistical Linear Models for Genome Virus Classification
NAUniSeq: A fast computational pipeline to search unique sequences for microbial diagnostics
reference-free base quality score recalibration
The generation of a kmers dataset that is associated with multiple gene sequences and the further manipulation of this generated dataset are the main contents of the current project.
Convert python string to hashed kmers and back again
Extract SNPs and accessory differences in closely related bacterial genomes from k-mers
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