This is the repository of the pipeline META-DIFF, which detects sequences in differential abundances between two conditions, and annotates them taxonomicaly and functionaly.
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Updated
Oct 10, 2024 - Python
This is the repository of the pipeline META-DIFF, which detects sequences in differential abundances between two conditions, and annotates them taxonomicaly and functionaly.
KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.
Fulgor is a fast and space-efficient colored de Bruijn graph index.
NAUniSeq: A fast computational pipeline to search unique sequences for microbial diagnostics
Visualization package for kmeRs similarity score matrix
Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
Very large scale k-mer counting and analysis on Apache Spark.
Extract SNPs and accessory differences in closely related bacterial genomes from k-mers
Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences
Analysis of DNA Sequence Classification Using Neural Networks - Bioinformatics Course Project - Winter 2022
An algorithm for finding SNPs of a long read compared to a reference genome
Bioinformatics 101 tool for counting unique k-length substrings in DNA
Convert python string to hashed kmers and back again
Benchmarks and evaluation scripts for the Fulgor index.
K-mer counting algorithms and count-data utilities for the BioJulia framework
A collection of various biopython scripts.
Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences
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